API for TodC314/MBatchExamples
MBatch Examples and Batch Run Interface

Global functions
RBN Source code
callAN_Adjusted Source code
callAN_Unadjusted Source code
callEB_withNonParametricPriors Source code
callEB_withParametricPriors Source code
callMBatch_BoxplotAllSamplesData Source code
callMBatch_BoxplotAllSamplesData_Structures Source code
callMBatch_BoxplotAllSamplesRLE Source code
callMBatch_BoxplotAllSamplesRLE_Structures Source code
callMBatch_BoxplotGroup Source code
callMBatch_BoxplotGroup_Structures Source code
callMBatch_HierarchicalClustering Source code
callMBatch_HierarchicalClustering_Structures Source code
callMBatch_PCA Source code
callMBatch_PCADualBatch Source code
callMBatch_PCADualBatch_Structures Source code
callMBatch_PCA_Structures Source code
callMBatch_SupervisedClustering Source code
callMBatch_SupervisedClusteringPairs Source code
callMBatch_SupervisedClusteringPairs_Structures Source code
callMBatch_SupervisedClustering_Structures Source code
callMP_ByBatch Source code
callMP_Overall Source code
compressIntoFilename Source code
convertNulls Source code
convertStringArray Source code
countMatches Source code
doAssessments Source code
doAssessmentsFromConfig Source code
doCorrections Source code
doCorrectionsFromConfig Source code
doMBatchFromCommandLine Source code
doMBatchRun Source code
getBatchFileName Source code
getMatrix Source code
getOutputDir Source code
isEBNPlusCorrectable Source code
isGoodEBNPlusData Source code
isTrendBatch Source code
loadDataManually Source code
mbatchRunFromConfig Source code
printVersion Source code
removeDuplicatesFromColumns Source code
removeDuplicatesFromRows Source code
sortDataframe Source code
sortMatrix Source code
testAllReplicates Source code
testIdentities Source code
testMbatchAssessments Source code
testMbatchCorrections Source code
testMbatchRun Source code
testNoReplicates Source code
testRBN Source code
testReuseReplicates Source code
test_mbatch_ebnplus_allreplicates Source code
test_mbatch_ebnplus_entiresetaspseudoreplicates Source code
test_mbatch_ebnplus_mdafiles Source code
test_mbatch_ebnplus_naInput Source code
test_mbatch_ebnplus_noReplicates Source code
test_mbatch_ebnplus_pseudoreplicateTestSet Source code
test_mbatch_ebnplus_pseudoreplicates Source code
test_mbatch_ebnplus_trainAndCorrect Source code
test_mbatch_ebnplus_trainAndValidate Source code
test_mbatch_ebnplus_trainAndValidateWithTest Source code
testrun1 Source code
testrun2 Source code
testrun3 Source code
testrun4 Source code
testrun5 Source code
trimGenes Source code
writeMatrixToFile Source code
TodC314/MBatchExamples documentation built on Sept. 16, 2017, 12:13 a.m.