R/oryzr.R

#' oryzr: Work with Oryza sativa gene identifiers.
#' 
#' Convert between different types of gene identifiers for \emph{Oryza sativa} 
#' L. ssp. \emph{japonica} cv. Nipponbare genes (MSU, Rap-DB, CSGNL, RefSeq 
#' mRNA).
#' 
#' @section Functions: \itemize{ \item \code{\link{LocToGeneName}}: Convert MSU 
#'   identifiers to CSGNL gene names and symbols and generate a label for 
#'   plotting if requested. \item \code{\link{LocToRefSeq}}: Convert MSU 
#'   identifiers to Rap-DB identifiers and map them to RefSeq mRNA identifiers. 
#'   \item \code{\link{SearchByGeneSymbol}}: Search Rap-DB and oryzabase
#'   information by gene symbol and return identifiers for potential matches.}
#'   
#' @docType package
#' @name oryzr

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TomHarrop/oryzr documentation built on May 9, 2019, 4:52 p.m.