inst/script/use_esophageal.R

## load the library
library(HiLDA)

## read in the data
inputFile <- system.file("extdata/esophageal.mp.txt.gz", package="HiLDA")

## perform Shiraishi et al's method, pmsignature, to extract signatures
G <- hildaReadMPFile(inputFile, numBases=5, trDir=TRUE)
USCbiostats/HiLDA documentation built on Oct. 15, 2021, 10:22 a.m.