USCbiostats/aphylo: Statistical Inference of Annotated Phylogenetic Trees
Version 0.0.99

The `aphylo` R package implements estimation and data imputation methods for Functional Annotations in Phylogenetic Trees. The core function consists on the computation of the log-likelihood of observing a given phylogenetic tree with functional annotation on its leafs, and probabilities associated to gain and loss of functionalities, including probabilities of experimental misclasification. `aphylo` works smoothly with popular tools for analysis of phylogenetic data such as `ape` R package, "Analyses of Phylogenetics and Evolution".

Getting started

Package details

Maintainer
LicenseMIT + file LICENSE
Version0.0.99
URL https://github.com/USCbiostats/phylogenetic
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("USCbiostats/aphylo")
USCbiostats/aphylo documentation built on June 8, 2018, 7:20 p.m.