Files in USCbiostats/hierr
Hierarchical Regularized Regression
.Rbuildignore
.gitattributes
.github/.gitignore
.github/workflows/test-coverage.yaml
.gitignore
.travis.yml
CODE_OF_CONDUCT.md
DESCRIPTION
NAMESPACE
NEWS.md
R/RcppExports.R
R/coef_tune_xrnet.R
R/coef_xrnet.R
R/data.R
R/define_penalty.R
R/plot_tune_xrnet.R
R/predict_tune_xrnet.R
R/predict_xrnet.R
R/tune_xrnet.R
R/xrnet.R
README.Rmd
README.md
appveyor.yml
cran-comments.md
data/GaussianExample.rda
docs/404.html
docs/CODE_OF_CONDUCT.html
docs/LICENSE-text.html
docs/apple-touch-icon-120x120.png
docs/apple-touch-icon-152x152.png
docs/apple-touch-icon-180x180.png
docs/apple-touch-icon-60x60.png
docs/apple-touch-icon-76x76.png
docs/apple-touch-icon.png
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/cran_comments.html
docs/docsearch.css
docs/docsearch.js
docs/favicon-16x16.png
docs/favicon-32x32.png
docs/favicon.ico
docs/index.html
docs/link.svg
docs/logo.png
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/Rplot001.png
docs/reference/Rplot002.png
docs/reference/coef.tune_xrnet.html
docs/reference/coef.xrnet.html
docs/reference/define_enet.html
docs/reference/define_lasso.html
docs/reference/define_penalty.html
docs/reference/define_ridge.html
docs/reference/ext_linear.html
docs/reference/figures/cv_results-1.png
docs/reference/figures/eqn1.gif
docs/reference/figures/eqn2.gif
docs/reference/figures/eqn3.gif
docs/reference/figures/eqn4.gif
docs/reference/figures/logo.png
docs/reference/figures/plot-error-curve-1.png
docs/reference/index.html
docs/reference/plot.tune_xrnet-1.png
docs/reference/plot.tune_xrnet-2.png
docs/reference/plot.tune_xrnet.html
docs/reference/predict.tune_xrnet.html
docs/reference/predict.xrnet.html
docs/reference/tune_xrnet-1.png
docs/reference/tune_xrnet.html
docs/reference/x_linear.html
docs/reference/xrnet.control.html
docs/reference/xrnet.html
docs/reference/xrnet_control.html
docs/reference/y_linear.html
inst/extdata/x_linear.txt
man/coef.tune_xrnet.Rd
man/coef.xrnet.Rd
man/define_enet.Rd
man/define_lasso.Rd
man/define_penalty.Rd
man/define_ridge.Rd
man/ext_linear.Rd
man/figures/cv_results-1.png
man/figures/eqn1.gif
man/figures/eqn2.gif
man/figures/eqn3.gif
man/figures/eqn4.gif
man/figures/logo.png
man/figures/plot-error-curve-1.png
man/plot.tune_xrnet.Rd
man/predict.tune_xrnet.Rd
man/predict.xrnet.Rd
man/tune_xrnet.Rd
man/x_linear.Rd
man/xrnet.Rd
man/xrnet_control.Rd
man/y_linear.Rd
paper/paper.bib
paper/paper.md
pkgdown/favicon/apple-touch-icon-120x120.png
pkgdown/favicon/apple-touch-icon-152x152.png
pkgdown/favicon/apple-touch-icon-180x180.png
pkgdown/favicon/apple-touch-icon-60x60.png
pkgdown/favicon/apple-touch-icon-76x76.png
pkgdown/favicon/apple-touch-icon.png
pkgdown/favicon/favicon-16x16.png
pkgdown/favicon/favicon-32x32.png
pkgdown/favicon/favicon.ico
revdep/.gitignore
revdep/email.yml
src/.gitignore
src/BinomialSolver.h
src/CoordDescTypes.h
src/CoordSolver.h
src/DataFunctions.h
src/GaussianSolver.h
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/Xrnet.h
src/XrnetCV.h
src/XrnetUtils.cpp
src/XrnetUtils.h
src/rcpp_wrappers_cv.cpp
src/rcpp_wrappers_fit.cpp
tests/testthat.R
tests/testthat/helper-CV-errors.R
tests/testthat/helper-soln-glmnet-binomial.R
tests/testthat/helper-soln-glmnet-noext.R
tests/testthat/helper-soln-match-CVX.R
tests/testthat/helper-soln-match-cvx-auto.R
tests/testthat/helper.R
tests/testthat/test-CV-errors.R
tests/testthat/test-predict-function.R
tests/testthat/test-soln-glmnet-binomial.R
tests/testthat/test-soln-glmnet-noext.R
tests/testthat/test-soln-match-CVX.R
tests/testthat/test-soln-match-cvx-auto.R
tests/testthat/test-user-input.R
tests/testthat/testdata/alphas_cvx_auto.rds
tests/testthat/testdata/alphas_cvx_mat.rds
tests/testthat/testdata/b0_glmnet.rds
tests/testthat/testdata/betas_binomial.rds
tests/testthat/testdata/betas_cvx_auto.rds
tests/testthat/testdata/betas_cvx_mat.rds
tests/testthat/testdata/betas_glmnet.rds
tests/testthat/testdata/cv_checks/cv_auc_glmnet.rds
tests/testthat/testdata/cv_checks/cv_deviance_glmnet.rds
tests/testthat/testdata/cv_checks/cv_mae_glmnet.rds
tests/testthat/testdata/cv_checks/cv_mean.rds
tests/testthat/testdata/cv_checks/foldid.rds
tests/testthat/testdata/cv_checks/foldid_binomial.rds
tests/testthat/testdata/lambda_binomial.rds
tests/testthat/testdata/path_en.rds
tests/testthat/testdata/path_lasso.rds
tests/testthat/testdata/path_ridge.rds
tests/testthat/testdata/xtest.rds
tests/testthat/testdata/xtest_binomial.rds
tests/testthat/testdata/ytest.rds
tests/testthat/testdata/ytest_binomial.rds
tests/testthat/testdata/ztest.rds
xrnet.Rproj
