In WendyLiuLab/BiactivationFlow: What the package does (short line)

Load package and data

library(FlowAnalysis)
library(magrittr)
library(dplyr)
library(ggplot2)
names(simultaneous)

2D density plots

simultaneous %>% filter(antibody=="exp") %>% render_density_plots()

Median plots

For each experiment:

medians = make_medians(simultaneous)
render_median_plots(medians)

Summarized:

normalized = normalize_by_positive_controls(simultaneous)
normalized_medians = make_medians(normalized)
render_summary_median_plots(normalized_medians)

WendyLiuLab/BiactivationFlow documentation built on May 9, 2019, 10:56 p.m.