README.md

In YTLogos/ggcorrplot: Visualization of a Correlation Matrix using 'ggplot2'

ggcorrplot: Visualization of a correlation matrix using ggplot2

The ggcorrplot package can be used to visualize easily a correlation matrix using ggplot2. It provides a solution for reordering the correlation matrix and displays the significance level on the correlogram. It includes also a function for computing a matrix of correlation p-values. It's inspired from the package corrplot.

Find out more at http://www.sthda.com/english/wiki/ggcorrplot.

Installation and loading

ggcorrplot can be installed from CRAN as follow:

install.packages("ggcorrplot")

Or, install the latest version from GitHub:

# Install
if(!require(devtools)) install.packages("devtools")
devtools::install_github("kassambara/ggcorrplot")

# Loading
library(ggcorrplot)
#> Loading required package: ggplot2

Getting started

Compute a correlation matrix

The mtcars data set will be used in the following R code. The function cor_pmat() [in ggcorrplot] computes a matrix of correlation p-values.

# Compute a correlation matrix
data(mtcars)
corr <- round(cor(mtcars), 1)
head(corr[, 1:6])
#>       mpg  cyl disp   hp drat   wt
#> mpg   1.0 -0.9 -0.8 -0.8  0.7 -0.9
#> cyl  -0.9  1.0  0.9  0.8 -0.7  0.8
#> disp -0.8  0.9  1.0  0.8 -0.7  0.9
#> hp   -0.8  0.8  0.8  1.0 -0.4  0.7
#> drat  0.7 -0.7 -0.7 -0.4  1.0 -0.7
#> wt   -0.9  0.8  0.9  0.7 -0.7  1.0

# Compute a matrix of correlation p-values
p.mat <- cor_pmat(mtcars)
head(p.mat[, 1:4])
#>               mpg          cyl         disp           hp
#> mpg  0.000000e+00 6.112687e-10 9.380327e-10 1.787835e-07
#> cyl  6.112687e-10 0.000000e+00 1.803002e-12 3.477861e-09
#> disp 9.380327e-10 1.803002e-12 0.000000e+00 7.142679e-08
#> hp   1.787835e-07 3.477861e-09 7.142679e-08 0.000000e+00
#> drat 1.776240e-05 8.244636e-06 5.282022e-06 9.988772e-03
#> wt   1.293959e-10 1.217567e-07 1.222311e-11 4.145827e-05

Correlation matrix visualization

# Visualize the correlation matrix
# --------------------------------
# method = "square" (default)
ggcorrplot(corr)

# method = "circle"
ggcorrplot(corr, method = "circle")

# Reordering the correlation matrix
# --------------------------------
# using hierarchical clustering
ggcorrplot(corr, hc.order = TRUE, outline.col = "white")

# Types of correlogram layout
# --------------------------------
# Get the lower triangle
ggcorrplot(corr, hc.order = TRUE, type = "lower",
     outline.col = "white")

# Get the upeper triangle
ggcorrplot(corr, hc.order = TRUE, type = "upper",
     outline.col = "white")

# Change colors and theme
# --------------------------------
# Argument colors
ggcorrplot(corr, hc.order = TRUE, type = "lower",
   outline.col = "white",
   ggtheme = ggplot2::theme_gray,
   colors = c("#6D9EC1", "white", "#E46726"))

# Add correlation coefficients
# --------------------------------
# argument lab = TRUE
ggcorrplot(corr, hc.order = TRUE, type = "lower",
   lab = TRUE)

# Add correlation significance level
# --------------------------------
# Argument p.mat
# Barring the no significant coefficient
ggcorrplot(corr, hc.order = TRUE,
    type = "lower", p.mat = p.mat)

# Leave blank on no significant coefficient
ggcorrplot(corr, p.mat = p.mat, hc.order = TRUE,
    type = "lower", insig = "blank")

YTLogos/ggcorrplot documentation built on May 3, 2019, 9:03 p.m.