README.md

In YaoZhou89/HDGENE: HDGENE: High dimensional Genetic association analysis package

HDGENE

HDGENE: High dimensional genetic association analysis package

Installation

library(devtools)

install_github("YaoZhou89/HDGENE")

Running the tests

library(HDGENE)

# read data

myGD = read.big.matrix("demo.dat",head=F,sep="\t",type="char")

myGM = read.table("demo.map",head=T)

myY = read.table("demo.txt",head=T)

myCV = read.table("demo.cov",head=T)

# run additive only model

myHDGENE = HDGENE(Y = myY,GD = myGD,GM = myGM,CV = myCV, maxLoop = 10,file.out = T,model = "A")

# run epistatic model: (model = "AA" or AA = "full")

myHDGENE = HDGENE(Y = myY,GD = myGD,GM = myGM,CV = myCV, maxLoop = 10,file.out = T,model = "AA")

Authors

Dr. Yao Zhou ([e-mail])

YaoZhou89/HDGENE documentation built on May 14, 2019, 7:42 a.m.