Man pages for YuLab-SMU/ChIPseeker
ChIPseeker for ChIP peak Annotation, Comparison, and Visualization

annotatePeakannotatePeak
as.data.frame.csAnnoas.data.frame.csAnno
as.GRangesas.GRanges
check_upstream_and_downstreamcheck upstream and downstream parameter
ChIPseeker-packageChIPseeker: ChIPseeker for ChIP peak Annotation, Comparison,...
combine_csAnnocombine_csAnno
covplotcovplot
csAnno-classClass "csAnno" This class represents the output of ChIPseeker...
dotFun.
downloadGEObedFilesdownloadGEObedFiles
downloadGSMbedFilesdownloadGSMbedFiles
dropAnnodropAnno
enrichAnnoOverlapenrichAnnoOverlap
enrichPeakOverlapenrichPeakOverlap
getAnnoStatgetAnnoStat
getBioRegiongetBioRegion
getGeneAnnogetGeneAnno
getGenomicAnnotationgetGenomicAnnotation
getGEOgenomeVersiongetGEOgenomeVersion
getGEOInfogetGEOInfo
getGEOspeciesgetGEOspecies
getNearestFeatureIndicesAndDistancesgetNearestFeatureIndicesAndDistances
getPromotersgetPromoters
getSampleFilesgetSampleFiles
getTagMatrixgetTagMatrix
getTagMatrix2getTagMatrix2
getTagMatrix2.binning.internalinternal function
getTagMatrix2.internalgetTagMatrix2.internal
getTagMatrix.binning.internalgetTagMatrix.binning.internal
getTagMatrix.internalgetTagMatrix.internal
infoInformation Datasets
makeBioRegionFromGrangesmakeBioRegionFromGranges
overlapoverlap
peakHeatmappeakHeatmap
peakHeatmap_multiple_SetspeakHeatmap
peak_Profile_Heatmappeak_Profile_Heatmap
plotAnnoBarplotAnnoBar.data.frame
plotAnnoBar-methodsplotAnnoBar method generics
plotAnnoPieplotAnnoPie
plotAnnoPie-methodsplotAnnoPie method generics
plotAvgProfplotAvgProf
plotAvgProf2plotAvgProf
plotAvgProf.binningplotAvgProf.binning
plotDistToTSS.data.frameplotDistToTSS.data.frame
plotDistToTSS-methodsplotDistToTSS method generics
plotMultiProfinternal function for plotPeakProf_MultiWindows
plotMultiProf.binninginternal function
plotMultiProf.binning.internalinternal function
plotMultiProf.normalinternal function
plotMultiProf.normal.internalinternal function
plotPeakProfplotPeakProf_MultiWindows
plotPeakProf2plotPeakProf2
plotPeakProf_MultiWindowsplotPeakProf_MultiWindows
readPeakFilereadPeakFile
reexportsObjects exported from other packages
seq2geneseq2gene
show-methodsshow method
shuffleshuffle
tagHeatmaptagHeatmap
upsetplot-methodsupsetplot method
vennpie-methodsvennpie method generics
vennplotvennplot
vennplot.peakfilevennplot.peakfile
YuLab-SMU/ChIPseeker documentation built on Feb. 11, 2024, 5:22 p.m.