Files in YuLab-SMU/DOSE
Disease Ontology Semantic and Enrichment analysis
.Rbuildignore
.github/issue_template.md
.gitignore
.travis.yml
DESCRIPTION
Makefile
NAMESPACE
NEWS
NEWS.md
R/00-AllClasses.R
R/AllGenerics.R
R/DOSE-package.R
R/accessor.R
R/build_Anno.R
R/clusterSim.R
R/doSim.R
R/enrichDGN.R
R/enrichDGNv.R
R/enrichDO.R
R/enrichDisease.R
R/enrichHPO.r
R/enrichMPO.r
R/enrichNCG.R
R/enricher_internal.R
R/geneSim.R
R/gseAnalyzer.R
R/gsea.R
R/gseaResult.R
R/gsfilter.R
R/mclusterSim.R
R/parse_ratio.R
R/print.R
R/setReadable.R
R/simplot.R
R/utilities.R
R/zzz.R
README.Rmd
README.md
appveyor.yml
data/DGN_EXTID2PATHID.rda
data/DGN_PATHID2EXTID.rda
data/DGN_PATHID2NAME.rda
data/DO2ALLEG.rda
data/DO2EG.rda
data/DOIC.rda
data/DOLite2EG.rda
data/DOLiteTerm.rda
data/EG2ALLDO.rda
data/EG2DO.rda
data/EG2DOLite.rda
data/NCG_EXTID2PATHID.rda
data/NCG_PATHID2EXTID.rda
data/NCG_PATHID2NAME.rda
data/VDGN_EXTID2PATHID.rda
data/VDGN_PATHID2EXTID.rda
data/VDGN_PATHID2NAME.rda
data/dotbl.rda
data/geneList.rda
data/hpotbl.rda
data/mpotbl.rda
inst/CITATION
inst/extdata/buildAnnoData.R
inst/extdata/build_DGN_Anno.R
inst/extdata/build_NCG_Anno.R
inst/extdata/preparing.geneList.R
man/DOSE-package.Rd
man/DataSet.Rd
man/EXTID2NAME.Rd
man/GSEA_internal.Rd
man/clusterSim.Rd
man/compareClusterResult-class.Rd
man/computeIC.Rd
man/doSim.Rd
man/doseSim.Rd
man/enrichDGN.Rd
man/enrichDGNv.Rd
man/enrichDO.Rd
man/enrichHPO.Rd
man/enrichMPO.Rd
man/enrichNCG.Rd
man/enrichResult-class.Rd
man/enricher_internal.Rd
man/gene2DO.Rd
man/geneID.Rd
man/geneInCategory.Rd
man/geneSim.Rd
man/gseDGN.Rd
man/gseDO.Rd
man/gseHPO.Rd
man/gseMPO.Rd
man/gseNCG.Rd
man/gseaResult-class.Rd
man/gsfilter.Rd
man/hpoSim.Rd
man/mclusterSim.Rd
man/mpoSim.Rd
man/parse_ratio.Rd
man/rebuildAnnoData.Rd
man/reexports.Rd
man/setReadable.Rd
man/show-methods.Rd
man/simplot.Rd
man/summary-methods.Rd
man/theme_dose.Rd
tests/testthat.R
tests/testthat/test-doSim.R
tests/testthat/test-gene2DO.R
tests/testthat/test-geneSim.R
vignettes/DOSE.Rmd
