Description Usage Format Source References See Also
Summary statistics for the autism spectrum disorder (AUT) subset of PGC's cross disorder analysis.
1 |
A data frame with 11 variables:
snpid
SNP rs identifier
hg18chr
hg18 chromosome (1-22)
bp
hg18 base position of SNP
a1
reference allele (not necessarily minor allele)
a2
alternate allele
or
odds ratio from the logistic regression including PCA covariates
se
standard error of the odds ratio
pval
asymptotic p-value
info
INFO score from imputation, ratio of variances can exceed 1
ngt
number of studies in which this SNP is directly genotyped (not imputed)
CEUaf
frequency of 'a1' in HapMap3 CEU (HapMap2 for BIP)
https://www.med.unc.edu/pgc/results-and-downloads
Cross-disorder group of the Psychiatric Genomics Consortium, Identification of risk loci with shared effects on five major psychiatric disorders: a genome-wide analysis. Lancet, epub (2013). DOI: 10.1016/S0140-6736(12)62129-1.
Other PGC datasets: adhd
, bip
,
mdd
, scz
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