scz: scz Summary Statistics

Description Usage Format Source References See Also

Description

Summary statistics for the schizophrenia (scz) subset of PGC's cross disorder analysis.

Usage

1

Format

A data frame with 11 variables:

snpid

SNP rs identifier

hg18chr

hg18 chromosome (1-22)

bp

hg18 base position of SNP

a1

reference allele (not necessarily minor allele)

a2

alternate allele

or

odds ratio from the logistic regression including PCA covariates

se

standard error of the odds ratio

pval

asymptotic p-value

info

INFO score from imputation, ratio of variances can exceed 1

ngt

number of studies in which this SNP is directly genotyped (not imputed)

CEUaf

frequency of 'a1' in HapMap3 CEU (HapMap2 for BIP)

Source

https://www.med.unc.edu/pgc/results-and-downloads

References

Schizophrenia PGC, Genome-wide association study of schizophrenia identifies five novel loci. Nature Genetics 43, 969 (2011). DOI: 10.1038/ng.940.

See Also

Other PGC datasets: adhd, aut, bip, mdd


aaronwolen/pgcxd documentation built on May 19, 2017, 12:49 a.m.