Tx2Gene: Transcript-to-gene identifier mappings

In acidgenomics/basejump: Base Functions for Bioinformatics

Description

Transcript-to-gene identifier mappings

Usage

Tx2Gene(object, ...)

## S4 method for signature 'matrix'
Tx2Gene(object)

## S4 method for signature 'data.frame'
Tx2Gene(object)

## S4 method for signature 'DataFrame'
Tx2Gene(object, metadata = TRUE)

## S4 method for signature 'GRanges'
Tx2Gene(object)

## S4 method for signature 'SummarizedExperiment'
Tx2Gene(object)

Arguments

object	Object.
...	Additional arguments.
metadata	logical(1). Include genome metadata.

Value

Tx2Gene.

Note

No attempt is made to arrange the rows by transcript identifier.

Updated 2019-10-24.

See Also

makeTx2Gene().

Examples

## SummarizedExperiment ====
data(SummarizedExperiment_transcripts, package = "acidtest")
txse <- SummarizedExperiment_transcripts

## SummarizedExperiment ====
x <- Tx2Gene(txse)
print(x)

acidgenomics/basejump documentation built on Nov. 21, 2019, 1:36 a.m.