Tx2Gene: Transcript-to-gene identifier mappings

Description Usage Arguments Value Note See Also Examples

Description

Transcript-to-gene identifier mappings

Usage

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Tx2Gene(object, ...)

## S4 method for signature 'matrix'
Tx2Gene(object)

## S4 method for signature 'data.frame'
Tx2Gene(object)

## S4 method for signature 'DataFrame'
Tx2Gene(object, metadata = TRUE)

## S4 method for signature 'GRanges'
Tx2Gene(object)

## S4 method for signature 'SummarizedExperiment'
Tx2Gene(object)

Arguments

object

Object.

...

Additional arguments.

metadata

logical(1). Include genome metadata.

Value

Tx2Gene.

Note

No attempt is made to arrange the rows by transcript identifier.

Updated 2019-10-24.

See Also

makeTx2Gene().

Examples

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## SummarizedExperiment ====
data(SummarizedExperiment_transcripts, package = "acidtest")
txse <- SummarizedExperiment_transcripts

## SummarizedExperiment ====
x <- Tx2Gene(txse)
print(x)

acidgenomics/basejump documentation built on Nov. 21, 2019, 1:36 a.m.