R/deprecated.R

Defines functions toStringUnique sortUnique multiassignAsEnvir matchArgsToDoCall basejumpTestsURL matchHumanOrthologs matchEnsemblReleaseToURL readTx2Gene readSampleData

Documented in basejumpTestsURL matchArgsToDoCall matchEnsemblReleaseToURL matchHumanOrthologs multiassignAsEnvir readSampleData readTx2Gene sortUnique toStringUnique

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## nolint start



#' @name defunct
#' @inherit AcidRoxygen::defunct description examples return seealso title
#' @inheritParams AcidRoxygen::params
#' @keywords internal
NULL



#' @name deprecated
#' @inherit AcidRoxygen::deprecated description examples return seealso title
#' @inheritParams AcidRoxygen::params
#' @keywords internal
NULL



## v0.11.11 ====================================================================
## NOTE This is still called by bcbioBase, need to update namespace.
#' @rdname deprecated
#' @export
readSampleData <- function(...) {
    .Deprecated("importSampleData")
    importSampleData(...)
}

#' @rdname deprecated
#' @export
readTx2Gene <- function(...) {
    .Deprecated("importTx2Gene")
    importTx2Gene(...)
}



## v0.13.0 =====================================================================
#' @rdname defunct
#' @export
matchEnsemblReleaseToURL <- function(...) {
    .Defunct("mapEnsemblReleaseToURL")
}

#' @rdname defunct
#' @export
matchHumanOrthologs <- function(...) {
    .Defunct("mapHumanOrthologs")
}



## v0.14.0 =====================================================================
#' @rdname defunct
#' @export
basejumpTestsURL <- function(...) {
    .Defunct()
}

#' @rdname defunct
#' @export
matchArgsToDoCall <- function(...) {
    .Defunct()
}

#' @rdname defunct
#' @export
multiassignAsEnvir <- function(...) {
    .Defunct()
}

#' @rdname defunct
#' @export
sortUnique <- function(...) {
    .Defunct()
}

#' @rdname defunct
#' @export
toStringUnique <- function(...) {
    .Defunct()
}



## v0.14.15 ====================================================================
#' @importFrom AcidBase metadataBlacklist
#' @export
AcidBase::metadataBlacklist



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acidgenomics/basejump documentation built on June 21, 2021, 9:43 a.m.