Files in acidgenomics/pfgsea
Acid Genomics GSEA
.Rbuildignore
.gitignore
.lintr
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/AllClasses.R
R/AllGenerics.R
R/AllGlobals.R
R/FgseaList-methods.R
R/GeneToSymbol-methods.R
R/RankedList-methods.R
R/alphaThreshold-methods.R
R/collectionNames-methods.R
R/combine-methods.R
R/contrastNames-methods.R
R/convertToHuman-methods.R
R/data.R
R/enrichedGeneSets-methods.R
R/export-methods.R
R/geneSet-methods.R
R/geneSetNames-methods.R
R/geneSetResults-methods.R
R/internal.R
R/leadingEdge-methods.R
R/markdownTables-methods.R
R/nesThreshold-methods.R
R/package.R
R/params.R
R/plotEnrichedGeneSets-methods.R
R/plotEnrichedUpset-methods.R
R/plotGeneSet-methods.R
R/plotHeatmap-methods.R
R/plotLfc-methods.R
R/plotNes-methods.R
R/prepareGeneSetFiles.R
R/results-methods.R
R/show-methods.R
R/updateObject-methods.R
README.md
_pkgdown.yml
data-raw/external/mm_deseq.R
data-raw/fgsea.R
data/fgsea.rda
inst/extdata/msigdb/7.0/msigdb_v7.0_GMTs/h.all.v7.0.entrez.gmt
inst/extdata/msigdb/7.0/msigdb_v7.0_GMTs/h.all.v7.0.symbols.gmt
inst/rmarkdown/templates/fgsea/skeleton/skeleton.Rmd
inst/rmarkdown/templates/fgsea/template.yaml
inst/scripts/render-fgsea.R
longtests/testthat.R
longtests/testthat/helper-cache.R
longtests/testthat/test-convertToHuman.R
man/AcidGSEA-package.Rd
man/AcidGseaTestsUrl.Rd
man/FgseaList-class.Rd
man/FgseaList.Rd
man/GeneToSymbol.Rd
man/RankedList-class.Rd
man/RankedList.Rd
man/alphaThreshold.Rd
man/collectionNames.Rd
man/combine.Rd
man/contrastNames.Rd
man/convertToHuman.Rd
man/enrichedGeneSets.Rd
man/export.Rd
man/fgsea.Rd
man/geneSet.Rd
man/geneSetNames.Rd
man/geneSetResults.Rd
man/leadingEdge.Rd
man/markdownTables.Rd
man/nesThreshold.Rd
man/params.Rd
man/plotEnrichedGeneSets.Rd
man/plotEnrichedUpset.Rd
man/plotGeneSet.Rd
man/plotHeatmap.Rd
man/plotLfc.Rd
man/plotNes.Rd
man/prepareGeneSetFiles.Rd
man/results.Rd
man/show.Rd
man/updateObject.Rd
package.Rproj
pkgdown/extra.css
tests/testthat.R
tests/testthat/helper-cache.R
tests/testthat/helper-globals.R
tests/testthat/test-FgseaList.R
tests/testthat/test-RankedList.R
tests/testthat/test-collectionNames.R
tests/testthat/test-combine.R
tests/testthat/test-enrichedGeneSets.R
tests/testthat/test-export.R
tests/testthat/test-geneSet.R
tests/testthat/test-markdownTables.R
tests/testthat/test-plotEnrichedGeneSets.R
tests/testthat/test-plotEnrichedUpset.R
tests/testthat/test-show.R
todo.org
