Files in adeschen/methylInheritance
Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/methylInheritance.R R/methylInheritanceInternalMethods.R R/methylInheritanceMethods.R R/print.methylInheritanceAllResults.R README.md
data/demoForTransgenerationalAnalysis.RData
data/methylInheritanceResults.RData
data/samplesForTransgenerationalAnalysis.RData
inst/CITATION
inst/NEWS
inst/extdata/TEST/SITES/SITES_observed_results.RDS
inst/extdata/TEST/SITES/SITES_permutation_1.RDS
inst/extdata/TEST/SITES/SITES_permutation_2.RDS
inst/extdata/TEST/SITES/SITES_permutation_3.RDS
inst/extdata/TEST/TILES/TILES_observed_results.RDS
inst/extdata/TEST/TILES/TILES_permutation_1.RDS
inst/extdata/TEST/TILES/TILES_permutation_2.RDS
inst/extdata/TEST/TILES/TILES_permutation_3.RDS
inst/extdata/methylObj_001.RDS
inst/extdata/permutationResultsForSites.RDS
inst/extdata/resultsForTransgenerationalAnalysis.RDS
inst/unitTests/test_methylInheritanceInternalMethods.R inst/unitTests/test_methylInheritanceMethods.R inst/unitTests/test_print_methylInheritanceAllResults.R inst/unitTests/test_validateRunPermutationUsingRDS.R man/calculateSignificantLevel.Rd man/createDataStructure.Rd man/createOutputDir.Rd man/demoForTransgenerationalAnalysis.Rd man/extractInfo.Rd man/formatInputMethylData.Rd man/getGRangesFromMethylDiff.Rd man/interGeneration.Rd man/isInterGenerationResults.Rd man/loadAllRDSResults.Rd man/loadConvergenceData.Rd man/mergePermutationAndObservation.Rd man/methylInheritance-package.Rd man/methylInheritanceAllResults.Rd man/methylInheritanceResults.Rd man/plotConvergenceGraph.Rd man/plotGraph.Rd man/readInterGenerationResults.Rd man/runObservation.Rd man/runOnePermutationOnAllGenerations.Rd man/runPermutation.Rd man/samplesForTransgenerationalAnalysis.Rd man/saveInterGenerationResults.Rd man/validateExtractInfo.Rd man/validateLoadConvergenceData.Rd man/validateMergePermutationAndObservation.Rd man/validateRunObservation.Rd man/validateRunPermutation.Rd
methylInheritance.Rproj
tests/runTests.R
vignettes/biblio.bibtex
vignettes/demo/F1_case_01.txt
vignettes/demo/F1_control_01.txt
vignettes/demo/F2_case_01.txt
vignettes/demo/F2_control_01.txt
vignettes/demo_01/SITES/SITES_observed_results.RDS
vignettes/demo_02/SITES/SITES_permutation_1.RDS
vignettes/demo_02/SITES/SITES_permutation_2.RDS
vignettes/methylInheritance.Rmd
vignettes/test_restart/TILES/TILES_observed_results.RDS
vignettes/test_restart/TILES/TILES_permutation_1.RDS
vignettes/test_restart/TILES/TILES_permutation_2.RDS
adeschen/methylInheritance documentation built on May 10, 2019, 5:53 a.m.