mkdocs/docs/documentation.md

In aiminy/ModifiedclusterProfiler: statistical analysis and visualization of functional profiles for genes and gene clusters

Vignettes

• DOSE: Disease enrichment analysis
• DOSE: Disease GSEA
• Statistical analysis and visualization of functional profiles for genes and gene clusters

Blog posts

News and updates

• clusterProfiler in Bioconductor 2.8
• clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters
• BioC 3.1: NEWS of my BioC packages
• BioC 3.2: NEWS of my BioC packages
• BioC 3.3: NEWS of my BioC packages
• BioC 3.4: NEWS of my BioC packages

ID conversion

• convert biological ID with KEGG API using clusterProfiler

Enrichment analysis

• GO analysis using clusterProfiler
• use simplify to remove redundancy of enriched GO terms
• KEGG Module Enrichment Analysis
• KEGG enrichment analysis with latest online data using clusterProfiler
• DAVID functional analysis with clusterProfiler
• functional enrichment for GTEx paper
• use clusterProfiler as an universal enrichment analysis tool
• functional enrichment analysis with NGS data
• leading edge analysis
• a formula interface for GeneOntology analysis bioinfoblog.it
• why clusterProfiler fails
• Comparison of clusterProfiler and GSEA-P

Visualization

• dotplot for enrichment result
• enrichment map

Find out more on https://guangchuangyu.github.io/tags/clusterprofiler.

Q&A

• Collecting Genes with similar GO term
• Convert gene to GO ID

Workflow

• An end to end workflow for differential gene expression using Affymetrix microarrays
• RNAseq workflow

aiminy/ModifiedclusterProfiler documentation built on May 10, 2019, 7:37 a.m.