Files in alexisvdb/singleCellHaystack
Finding surprising needles (=genes) in haystacks (=single cell transcriptome data)

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/data.R R/haystack.R R/haystack_IO.R R/haystack_clustering.R R/haystack_clustering_highD.R R/haystack_highD.R R/haystack_visualization.R R/s3.R R/singleCellHaystack-package.R README.Rmd README.md
_pkgdown.yml
data-raw/icon.csv
data-raw/toy_data.R
data/toy.rda
docs/LICENSE-text.html
docs/LICENSE.html
docs/articles/a01_introduction.html
docs/articles/a01_introduction_files/figure-html/example3-1.png
docs/articles/a01_introduction_files/figure-html/example5-1.png
docs/articles/a02_example_tsne2D_default.html
docs/articles/a02_example_tsne2D_default_files/figure-html/example1-1.png
docs/articles/a02_example_tsne2D_default_files/figure-html/example4-1.png
docs/articles/a02_example_tsne2D_default_files/figure-html/example4-2.png
docs/articles/a02_example_tsne2D_default_files/figure-html/example7-1.png
docs/articles/a03_example_tsne2D_advanced.html
docs/articles/a03_example_tsne2D_advanced_files/figure-html/example1-1.png
docs/articles/a03_example_tsne2D_advanced_files/figure-html/example4-1.png
docs/articles/a03_example_tsne2D_advanced_files/figure-html/example4-2.png
docs/articles/a03_example_tsne2D_advanced_files/figure-html/example7-1.png
docs/articles/index.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/dat.expression.html
docs/reference/dat.tsne.html
docs/reference/default_bandwidth.nrd.html
docs/reference/figures/README-example3-1.png
docs/reference/figures/README-example5-1.png
docs/reference/get_D_KL.html
docs/reference/get_D_KL_highD.html
docs/reference/get_density.html
docs/reference/get_dist_two_sets.html
docs/reference/get_euclidean_distance.html
docs/reference/get_grid_points.html
docs/reference/get_log_p_D_KL.html
docs/reference/get_parameters_haystack.html
docs/reference/get_reference.html
docs/reference/haystack.html
docs/reference/haystack_2D-1.png
docs/reference/haystack_2D.html
docs/reference/haystack_highD.html
docs/reference/hclust_haystack.html
docs/reference/hclust_haystack_highD.html
docs/reference/hclust_haystack_raw-1.png
docs/reference/hclust_haystack_raw.html
docs/reference/index.html
docs/reference/kde2d_faster.html
docs/reference/kmeans_haystack.html
docs/reference/kmeans_haystack_highD.html
docs/reference/kmeans_haystack_raw-1.png
docs/reference/kmeans_haystack_raw.html
docs/reference/outfile.csv
docs/reference/plot_gene_haystack.html
docs/reference/plot_gene_haystack_raw-1.png
docs/reference/plot_gene_haystack_raw-2.png
docs/reference/plot_gene_haystack_raw-3.png
docs/reference/plot_gene_haystack_raw-4.png
docs/reference/plot_gene_haystack_raw-5.png
docs/reference/plot_gene_haystack_raw-6.png
docs/reference/plot_gene_haystack_raw.html
docs/reference/plot_gene_set_haystack.html
docs/reference/plot_gene_set_haystack_raw-1.png
docs/reference/plot_gene_set_haystack_raw-2.png
docs/reference/plot_gene_set_haystack_raw-3.png
docs/reference/plot_gene_set_haystack_raw.html
docs/reference/read_haystack.html
docs/reference/show_result_haystack.html
docs/reference/singleCellHaystack-package.html
docs/reference/write_haystack.html
docs/sitemap.xml
man/dat.expression.Rd man/dat.tsne.Rd man/default_bandwidth.nrd.Rd
man/figures/README-example3-1.png
man/figures/README-example5-1.png
man/get_D_KL.Rd man/get_D_KL_highD.Rd man/get_density.Rd man/get_dist_two_sets.Rd man/get_euclidean_distance.Rd man/get_grid_points.Rd man/get_log_p_D_KL.Rd man/get_parameters_haystack.Rd man/get_reference.Rd man/haystack.Rd man/haystack_2D.Rd man/haystack_highD.Rd man/hclust_haystack.Rd man/hclust_haystack_highD.Rd man/hclust_haystack_raw.Rd man/kde2d_faster.Rd man/kmeans_haystack.Rd man/kmeans_haystack_highD.Rd man/kmeans_haystack_raw.Rd man/plot_gene_haystack.Rd man/plot_gene_haystack_raw.Rd man/plot_gene_set_haystack.Rd man/plot_gene_set_haystack_raw.Rd man/read_haystack.Rd man/show_result_haystack.Rd man/singleCellHaystack-package.Rd man/write_haystack.Rd
singleCellHaystack.Rproj
tests/testthat.R tests/testthat/test-get_d_kl.R tests/testthat/test-get_parameters_haystack.R tests/testthat/test-haystack.R tests/testthat/test-kde2d_faster.R
vignettes/.gitignore
vignettes/a01_introduction.Rmd vignettes/a02_example_tsne2D_default.Rmd vignettes/a03_example_tsne2D_advanced.Rmd
alexisvdb/singleCellHaystack documentation built on Aug. 1, 2019, 11:53 p.m.