Man pages for alexkychen/assignPOP
Population Assignment using Genetic, Non-Genetic or Integrated Data in a Machine Learning Framework

accuracy.kfoldEstimate assignment accuracies of K-fold cross-validation...
accuracy.MCEstimate assignment accuracies of Monte-Carlo...
accuracy.plotMake a boxplot (ggplot2 style) of assignment accuracy from...
assign.kfoldPopulation assignment test using K-fold cross-validation
assign.matrixMake an assignment maxtrix from cross-validation results
assign.MCPopulation assignment test using Monte-Carlo cross-validation
assign.XPerform a population assignment test on unknown individuals...
check.lociCheck which loci frequently have high Fst across training...
compile.dataCompile genetic and other non-genetic data
membership.plotMake a membership probability plot using results from K-fold...
read.GenepopRead GENEPOP format file
read.structureRead Structure format file
reduce.alleleRemove low variance alleles (dimensionality reduction)
alexkychen/assignPOP documentation built on Aug. 16, 2017, 3:37 a.m.