In allanecology/BetaDivMultifun: Testing effects of multitrophic beta-diversity and land-use intensity (LUI) on ecosystem multifunctionality

Intro

run on the cluster. Too large dataset for running on own machine (contains comparisons, not just <150 rows as the functions dataset).

instructions : cluster_scripts_documentation.R

file : betadiversity_imputation.R data : master_diversity_alpha_beta.rds place to BetaDivMultifun/ at the moment (not within vignettes, not in data.)

slurm file:

#!/bin/sh
#SBATCH --mail-user=<mail>
#SBATCH --mail-type=end,fail

#SBATCH --mem-per-cpu=4G
#SBATCH --time=2:00:00
#SBATCH --workdir=.
#SBATCH --cpus-per-task=8
#SBATCH --job-name="beta_imp_test"

# change
#SBATCH --output=R.out
#SBATCH --error=R.err

############################# execute code here################################
module load vital-it
module load R/latest

R CMD BATCH --no-save -no-restore betadiversity_imputation.R

sbatch Rbatch.sh
squeue -u <username>

Submitted batch job 18971051

allanecology/BetaDivMultifun documentation built on Nov. 9, 2023, 8:47 p.m.