run on the cluster. Too large dataset for running on own machine (contains comparisons, not just <150 rows as the functions dataset).
instructions : cluster_scripts_documentation.R
file : betadiversity_imputation.R
data : master_diversity_alpha_beta.rds
place to BetaDivMultifun/
at the moment (not within vignettes, not in data.)
slurm file:
#!/bin/sh #SBATCH --mail-user=<mail> #SBATCH --mail-type=end,fail #SBATCH --mem-per-cpu=4G #SBATCH --time=2:00:00 #SBATCH --workdir=. #SBATCH --cpus-per-task=8 #SBATCH --job-name="beta_imp_test" # change #SBATCH --output=R.out #SBATCH --error=R.err ############################# execute code here################################ module load vital-it module load R/latest R CMD BATCH --no-save -no-restore betadiversity_imputation.R
sbatch Rbatch.sh squeue -u <username>
Submitted batch job 18971051
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