revdep/problems.md

In amices/mice: Multivariate Imputation by Chained Equations

bipd

• Version: 0.3
• GitHub: NA
• Source code: https://github.com/cran/bipd
• Date/Publication: 2022-06-05 16:10:05 UTC
• Number of recursive dependencies: 152

Run revdepcheck::revdep_details(, "bipd") for more info

Newly broken

• checking dependencies in R code ...sh: line 1: 68994 Segmentation fault: 11 R_DEFAULT_PACKAGES=NULL '/Library/Frameworks/R.framework/Resources/bin/R' --vanilla --no-echo 2>&1 < '/var/folders/5_/g85d42yj50b6lrjq4rzjzg8w0000gn/T//RtmpRR1uev/file10a3acf967c2' ``` NOTE

  caught segfault address 0x656d756c6f562f6d, cause 'invalid permissions'

  Traceback: 1: dyn.load(file, DLLpath = DLLpath, ...) 2: library.dynam(lib, package, package.lib) 3: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 4: asNamespace(ns) ... 7: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage")) 8: suppressMessages(loadNamespace(p)) 9: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning")) 10: suppressWarnings(suppressMessages(loadNamespace(p))) 11: doTryCatch(return(expr), name, parentenv, handler) 12: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 13: tryCatchList(expr, classes, parentenv, handlers) 14: tryCatch(suppressWarnings(suppressMessages(loadNamespace(p))), error = function(e) e) 15: tools:::.check_packages_used(package = "bipd") An irrecoverable exception occurred. R is aborting now ... ```

Newly fixed

• checking dependencies in R code ...sh: line 1: 68915 Segmentation fault: 11 R_DEFAULT_PACKAGES=NULL '/Library/Frameworks/R.framework/Resources/bin/R' --vanilla --no-echo 2>&1 < '/var/folders/5_/g85d42yj50b6lrjq4rzjzg8w0000gn/T//RtmpOL3iVt/file109d29daaa65' ``` NOTE

  caught segfault address 0x656d756c6f562f6d, cause 'invalid permissions'

  Traceback: 1: dyn.load(file, DLLpath = DLLpath, ...) 2: library.dynam(lib, package, package.lib) 3: loadNamespace(j <- i[[1L]], c(lib.loc, .libPaths()), versionCheck = vI[[j]]) 4: asNamespace(ns) ... 7: withCallingHandlers(expr, message = function(c) if (inherits(c, classes)) tryInvokeRestart("muffleMessage")) 8: suppressMessages(loadNamespace(p)) 9: withCallingHandlers(expr, warning = function(w) if (inherits(w, classes)) tryInvokeRestart("muffleWarning")) 10: suppressWarnings(suppressMessages(loadNamespace(p))) 11: doTryCatch(return(expr), name, parentenv, handler) 12: tryCatchOne(expr, names, parentenv, handlers[[1L]]) 13: tryCatchList(expr, classes, parentenv, handlers) 14: tryCatch(suppressWarnings(suppressMessages(loadNamespace(p))), error = function(e) e) 15: tools:::.check_packages_used(package = "bipd") An irrecoverable exception occurred. R is aborting now ... ```

In both

• checking running R code from vignettes ... ``` ‘IPD-meta-analysis-with-missing-data.Rmd’ using ‘UTF-8’... failed ‘IPD-meta-analysis.Rmd’ using ‘UTF-8’... failed ‘Imputing-missing-values-in-IPD.Rmd’ using ‘UTF-8’... OK ERROR Errors in running code in vignettes: when running code in ‘IPD-meta-analysis-with-missing-data.Rmd’ ...

  • X <- with(current.data, apply(current.data[, c(" ..." ... [TRUNCATED]

  When sourcing ‘IPD-meta-analysis-with-missing-data.R’: ... + n.iter = 5000)

  When sourcing ‘IPD-meta-analysis.R’: Error: .onLoad failed in loadNamespace() for 'rjags', details: call: dyn.load(file, DLLpath = DLLpath, ...) error: unable to load shared object '/Users/buurensv/Dropbox/Package/mice/mice/revdep/library.noindex/bipd/rjags/libs/rjags.so': dlopen(/Users/buurensv/Dropbox/Package/mice/mice/revdep/library.noindex/bipd/rjags/libs/rjags.so, 0x000A): Library not loaded: /usr/local/lib/libjags.4.dylib Referenced from: <337070A2-BC15-3117-B643-96612554E437> /Users/buurensv/Dropbox/Package/mice/mice/revdep/library.noindex/bipd/rjags/libs/rjags.so Reason: tried: '/usr/local/lib/libjags.4.dylib' (mach-o file, but is an incompatible architecture (have 'x86_64', need 'arm64e' or 'arm64')), '/System/Volumes/Preboot/Cryptexes/OS/usr/local/lib/libjags.4.dylib' (no such file), '/usr/local/lib/libjags.4.dylib' (mach-o file, but is an incompatible architecture (have 'x86_64', need 'arm64e' or 'arm64')), '/Library/Frameworks/R.framework/Resources/lib/libjags.4.dylib' (no such file), '/Library/Java/ Execution halted ```

amices/mice documentation built on July 3, 2025, 6:03 p.m.