Files in andreaskapou/BPRMeth2
Model higher-order methylation profiles

.Rbuildignore
.gitignore
BPRMeth.Rproj
DESCRIPTION
NAMESPACE
R/BPRMeth_package.R R/RcppExports.R R/basis_functions.R R/cluster_profiles_mle.R R/cluster_profiles_vb.R R/data.R R/deprecated_functions.R R/deprecated_process_functions.R R/design_matrix.R R/infer_profiles_gibbs.R R/infer_profiles_mle.R R/infer_profiles_vb.R R/model_log_likelihood.R R/plotting_functions.R R/predict_expr.R R/process_data.R R/utils.R README.md data-raw/create_encode_data.R data-raw/create_synth_data.R
data/bernoulli_data.rda
data/beta_data.rda
data/binomial_data.rda
data/encode_expr.rda
data/encode_met.rda
data/gaussian_data.rda
data/gex_data.rda
data/meth_data.rda
inst/NEWS.Rd
inst/extdata/dummy_anno.bed
inst/extdata/dummy_expr.bed
inst/extdata/dummy_met.bed
inst/extdata/hg19.chr.sizes
inst/extdata/rnaseq.bed
inst/extdata/rrbs.bed
inst/figures/bprmeth-workflow.png
inst/figures/model.png
inst/figures/workflow.png
man/BPRMeth.Rd man/bernoulli_data.Rd man/beta_data.Rd man/binomial_data.Rd man/boxplot_cluster_expr.Rd man/bpr_cluster_wrap.Rd man/bpr_optimize.Rd man/bpr_predict_wrap.Rd man/cluster_profiles_mle.Rd man/cluster_profiles_vb.Rd man/create_anno_region.Rd man/create_basis.Rd man/create_region_data.Rd man/design_matrix.Rd man/encode_expr.Rd man/encode_met.Rd man/eval_functions.Rd man/gaussian_data.Rd man/gex_data.Rd man/infer_profiles_gibbs.Rd man/infer_profiles_mle.Rd man/infer_profiles_vb.Rd man/inner_predict_model_expr.Rd man/inner_train_model_expr.Rd man/meth_data.Rd man/model_log_likelihood.Rd man/old_boxplot_cluster_gex.Rd man/old_plot_cluster_prof.Rd man/old_plot_fitted_profiles.Rd man/plot_cluster_profiles.Rd man/plot_infer_profiles.Rd man/plot_predicted_expr.Rd man/pool_bs_seq_rep.Rd man/predict_expr.Rd man/preprocess_bs_seq.Rd man/preprocess_final_HTS_data.Rd man/process_haib_caltech_wrap.Rd man/read_anno.Rd man/read_bs_encode_haib.Rd man/read_chrom_size.Rd man/read_expr.Rd man/read_met.Rd man/read_rna_encode_caltech.Rd
src/BPRMeth.so
src/Makevars
src/Makevars.win
src/RcppExports.cpp
src/RcppExports.o
src/model_likelihood.cpp
src/model_likelihood.o
tests/testthat.R tests/testthat/test-basis.R tests/testthat/test-design_matrix.R tests/testthat/test-eval_function.R tests/testthat/test-likelihoods.R tests/testthat/test-utils.R vignettes/BPRMeth_vignette.Rmd
andreaskapou/BPRMeth2 documentation built on Jan. 13, 2018, 12:12 a.m.