Files in andzajan/mzmatch.R
mzmatch and PeakML integration for XCMS.
.Rbuildignore
.gitattributes
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/PeakML.BlankFilter.R
R/PeakML.ComparePeakSets.R
R/PeakML.DilutionTrendFilter.R
R/PeakML.FilterPeakGroups.R
R/PeakML.GapFiller.R
R/PeakML.Isotope.DB2Text.R
R/PeakML.Isotope.ReadDB.R
R/PeakML.Isotope.TargettedIsotopes.R
R/PeakML.Isotope.UntargettedIsotopes.R
R/PeakML.Isotope.filterPeaks.R
R/PeakML.Isotope.filteroutUnlabelled.R
R/PeakML.Isotope.getAbunMtxList.R
R/PeakML.Isotope.getChromData.R
R/PeakML.Isotope.getFCMtx.R
R/PeakML.Isotope.getFCMtxAbun.R
R/PeakML.Isotope.getIsotopes.R
R/PeakML.Isotope.getMassWindow.R
R/PeakML.Isotope.getRatioMtxList.R
R/PeakML.Isotope.getTrendList.R
R/PeakML.Isotope.getTrendMtx.R
R/PeakML.Isotope.plotSamples.R
R/PeakML.Isotope.plotUntargettedIsotopes.R
R/PeakML.Isotope.processTargettedIsotopes.R
R/PeakML.Isotope.processUntargettedIsotopes.R
R/PeakML.Methods.DBidToCompoundName.R
R/PeakML.Methods.PeakShapeCorrelation.R
R/PeakML.Methods.baseCorrection.R
R/PeakML.Methods.combinePeakMLfiles.R
R/PeakML.Methods.extractFileName.R
R/PeakML.Methods.extractPeakGroups.R
R/PeakML.Methods.formula2mass.R
R/PeakML.Methods.getCarbon.R
R/PeakML.Methods.getChromData.R
R/PeakML.Methods.getCompleteTable.R
R/PeakML.Methods.getESIpolarity.R
R/PeakML.Methods.getElements.R
R/PeakML.Methods.getGroupAnnotations.R
R/PeakML.Methods.getMassCorrection.R
R/PeakML.Methods.getPPMMass.R
R/PeakML.Methods.getPPMWindow.R
R/PeakML.Methods.getPeakData.R
R/PeakML.Methods.getPhenoData.R
R/PeakML.Methods.getProtonCoef.R
R/PeakML.Methods.getProtonMass.R
R/PeakML.Methods.getRTWindow.R
R/PeakML.Methods.getRTWindowFromString.R
R/PeakML.Methods.getRawDataPaths.R
R/PeakML.Methods.getRawMat.R
R/PeakML.Methods.getRawSignals.R
R/PeakML.Methods.getStdErr.R
R/PeakML.Methods.mzML.startTimeStamp.R
R/PeakML.Methods.writeGroupAnnotations.R
R/PeakML.Normalization.R
R/PeakML.PeakChopper.R
R/PeakML.Plot.BarPlot.R
R/PeakML.Plot.Chromatograms.R
R/PeakML.Plot.RankProducts.R
R/PeakML.Plot.RelatedPeaks.R
R/PeakML.QCIntensityCorrection.R
R/PeakML.QCRSDFilter.R
R/PeakML.QCSignalCorrection.R
R/PeakML.RankProducts.R
R/PeakML.Read.R
R/PeakML.Viewer.R
R/PeakML.Write.R
R/PeakML.bubbleplot.R
R/PeakML.get.attributes.R
R/PeakML.trendPlot.R
R/PeakML.xcms.read.R
R/PeakML.xcms.write.R
R/PeakML.xcms.write.SingleInstance.R
R/PeakML.xcms.write.SingleMeasurement.R
R/RCreateXMLDB.R
R/TrendPlot.R
R/mzmatch.R.Setup.R
R/mzmatch.XML.data.base.parser.R
R/mzmatch.init.R
R/mzmatch.ipeak.Combine.R
R/mzmatch.ipeak.ExtractBackgroundIons.R
R/mzmatch.ipeak.align.CowCoda.R
R/mzmatch.ipeak.convert.ConvertToText.R
R/mzmatch.ipeak.db.CreateCycDB.R
R/mzmatch.ipeak.db.CreateHMDB.R
R/mzmatch.ipeak.db.CreateLMDB.R
R/mzmatch.ipeak.db.DBToText.R
R/mzmatch.ipeak.filter.FilterCluster.R
R/mzmatch.ipeak.filter.FilterOnRelationIDs.R
R/mzmatch.ipeak.filter.NoiseFilter.R
R/mzmatch.ipeak.filter.RSDFilter.R
R/mzmatch.ipeak.filter.SimpleFilter.R
R/mzmatch.ipeak.graphics.PeakMLToTIC.R
R/mzmatch.ipeak.normalisation.Normalisation.R
R/mzmatch.ipeak.normalisation.VanDeSompele.R
R/mzmatch.ipeak.sort.MetAssign.R
R/mzmatch.ipeak.sort.PeakSort.R
R/mzmatch.ipeak.sort.RelatedPeaks.R
R/mzmatch.ipeak.util.BreakupRelated.R
R/mzmatch.ipeak.util.ExtractSets.R
R/mzmatch.ipeak.util.Identify.R
R/mzmatch.ipeak.util.Recovery.R
README.rst
man/PeakML.BlankFilter.Rd
man/PeakML.ComparePeakSets.Rd
man/PeakML.DilutionTrendFilter.Rd
man/PeakML.FilterPeakGroups.Rd
man/PeakML.GapFiller.Rd
man/PeakML.Isotope.DB2Text.Rd
man/PeakML.Isotope.ReadDB.Rd
man/PeakML.Isotope.TargettedIsotopes.Rd
man/PeakML.Isotope.UntargettedIsotopes.Rd
man/PeakML.Isotope.filterPeaks.Rd
man/PeakML.Isotope.filteroutUnlabelled.Rd
man/PeakML.Isotope.getAbunMtxList.Rd
man/PeakML.Isotope.getChromData.Rd
man/PeakML.Isotope.getFCMtx.Rd
man/PeakML.Isotope.getFCMtxAbun.Rd
man/PeakML.Isotope.getIsotopes.Rd
man/PeakML.Isotope.getMassWindow.Rd
man/PeakML.Isotope.getRatioMtxList.Rd
man/PeakML.Isotope.getTrendList.Rd
man/PeakML.Isotope.getTrendMtx.Rd
man/PeakML.Isotope.plotSamples.Rd
man/PeakML.Isotope.plotUntargettedIsotopes.Rd
man/PeakML.Isotope.processTargettedIsotopes.Rd
man/PeakML.Isotope.processUntargettedIsotopes.Rd
man/PeakML.Methods.DBidToCompoundName.Rd
man/PeakML.Methods.PeakShapeCorrelation.Rd
man/PeakML.Methods.baseCorrection.Rd
man/PeakML.Methods.combinePeakMLfiles.Rd
man/PeakML.Methods.extractFileName.Rd
man/PeakML.Methods.extractPeakSets.Rd
man/PeakML.Methods.formula2mass.Rd
man/PeakML.Methods.getCarbon.Rd
man/PeakML.Methods.getChromData.Rd
man/PeakML.Methods.getCompleteTable.Rd
man/PeakML.Methods.getElements.Rd
man/PeakML.Methods.getGroupAnnotations.Rd
man/PeakML.Methods.getMassCorrection.Rd
man/PeakML.Methods.getPPMMass.Rd
man/PeakML.Methods.getPPMWindow.Rd
man/PeakML.Methods.getPeakData.Rd
man/PeakML.Methods.getPhenoData.Rd
man/PeakML.Methods.getProtonCoef.Rd
man/PeakML.Methods.getProtonMass.Rd
man/PeakML.Methods.getRTWindow.Rd
man/PeakML.Methods.getRTWindowFromString.Rd
man/PeakML.Methods.getRawDataPaths.Rd
man/PeakML.Methods.getRawMat.Rd
man/PeakML.Methods.getRawSignals.Rd
man/PeakML.Methods.getStdErr.Rd
man/PeakML.Methods.writeGroupAnnotations.Rd
man/PeakML.Normalization.Rd
man/PeakML.Plot.BarPlot.Rd
man/PeakML.Plot.Chromatograms.Rd
man/PeakML.Plot.RankProducts.Rd
man/PeakML.Plot.RelatedPeaks.Rd
man/PeakML.RankProducts.Rd
man/PeakML.Read.Rd
man/PeakML.Viewer.Rd
man/PeakML.Write.Rd
man/PeakML.bubbleplot.Rd
man/PeakML.get.attributes.Rd
man/PeakML.trendPlot.Rd
man/PeakML.xcms.read.Rd
man/PeakML.xcms.write.Rd
man/PeakML.xcms.write.SingleInstance.Rd
man/PeakML.xcms.write.SingleMeasurement.Rd
man/RCreateXMLDB.Rd
man/TrendPlot.Rd
man/mzmatch.R-package.Rd
man/mzmatch.R.Setup.Rd
man/mzmatch.XML.data.base.parser.Rd
man/mzmatch.init.Rd
man/mzmatch.ipeak.Combine.Rd
man/mzmatch.ipeak.ExtractBackgroundIons.Rd
man/mzmatch.ipeak.align.CowCoda.Rd
man/mzmatch.ipeak.convert.ConvertToText.Rd
man/mzmatch.ipeak.db.CreateCycDB.Rd
man/mzmatch.ipeak.db.CreateHMDB.Rd
man/mzmatch.ipeak.db.CreateLMDB.Rd
man/mzmatch.ipeak.db.DBToText.Rd
man/mzmatch.ipeak.filter.FilterCluster.Rd
man/mzmatch.ipeak.filter.FilterOnRelationIDs.Rd
man/mzmatch.ipeak.filter.NoiseFilter.Rd
man/mzmatch.ipeak.filter.RSDFilter.Rd
man/mzmatch.ipeak.filter.SimpleFilter.Rd
man/mzmatch.ipeak.graphics.PeakMLToTIC.Rd
man/mzmatch.ipeak.normalisation.Normalisation.Rd
man/mzmatch.ipeak.normalisation.VanDeSompele.Rd
man/mzmatch.ipeak.sort.MetAssign.Rd
man/mzmatch.ipeak.sort.PeakSort.Rd
man/mzmatch.ipeak.sort.RelatedPeaks.Rd
man/mzmatch.ipeak.util.BreakupRelated.Rd
man/mzmatch.ipeak.util.ExtractSets.Rd
man/mzmatch.ipeak.util.Identify.Rd
man/mzmatch.ipeak.util.Recovery.Rd
