PeakML.Methods.combinePeakMLfiles: PeakML.Methods.combinePeakMLfiles

Description Usage Arguments Details Value Author(s) References See Also

View source: R/PeakML.Methods.combinePeakMLfiles.R

Description

This function combines several peakML files in one peakML file.

Usage

1
  PeakML.Methods.combinePeakMLfiles (PeakMLfiles,outputfile,ionisation="detect",Rawpath=NULL)

Arguments

PeakMLfiles

Caharacter vecoter of the file names of file which should be combined.

outputfile

Name of the resulting peakML file.

ionisation

Defaulted to "detect". See documentation for PeakML.Methods.getProtonCoef.

Rawpath

Path to the raw data if different from the one stored in the PeakML file.

Details

The PeakML file format defines an open and extensible file format for storing extracted hyphenated mass spectrometry data. As such, the format will enable users to store intermediate data in a structured manner, but more importantly, to exchange data between different data analysis software. This will give complete flexible control to the users of data analysis software to cherry pick those components best suited to their needs.

The PeakML.Methods.getGroupAnnotations function allows to access attributes defined in PeakML file.

Value

List of 3 data tables.

Author(s)

Andris Jankevics (a.jankevics@rug.nl) Richard Scheltema (r.a.scheltema@rug.nl)

References

PeakML/mzMatch: A File Format, Java Library, R Library, and Tool-Chain for Mass Spectrometry Data Analysis, Richard A. Scheltema, Andris Jankevics, Ritsert C. Jansen, Morris A. Swertz, Rainer Breitling, Analytical Chemistry, 2011 83 (7), 2786-2793.

See Also

PeakML.Read


andzajan/mzmatch.R documentation built on Dec. 1, 2020, 11:33 a.m.