anilchalisey/alignr: Alignment of reads and manipulation of BAM files
Version 0.1.0

This package leverages 'HISAT2', SAMtools and Sambamba to align and filter reads. It aligns reads to SAM format summarises the results from multiple reports and generates single-sample or multi-sample HTML summary reports.

Getting started

Package details

Maintainer
LicenseGPL-3
Version0.1.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("devtools")
library(devtools)
install_github("anilchalisey/alignr")
anilchalisey/alignr documentation built on May 22, 2017, 12:06 a.m.