Man pages for araezopsis/bioseqr

calc_GCperCaluculate Oligo GC%
calc_oligoDNATmCalculate Oligo DNA Tm
calc_proteinMWCalculate protein molecular weight
d_convert_iupac2regexconvert IUPAC CODE to regular expression
d_find_orfFind open reading frames from dna
d_find_orf_from_vectorFind open reading frames from dna
d_LRReturn product sequence after LR reaction
d_pcrCalculate PCR product length
d_primer_checkPrimer check
d_rcReturn the reverse complement sequence
d_TOPOReturn the product sequence of after TOPO reaction
d_TOPO_LRTOPO and LR reaction
d_translateReturn the tlanslated sequence
d_translate_fromORFExtract ORF of expression vector, and translate it.
d_translate_from_vectorReturn the tlanslated sequence
d_trim_stopTrim stop codon from CDS
g_alignAlign sequences
g_check_sequenceCheck sequence
g_convert2BioStringConvert sequence to Biostrings::DNAString object
g_count_seqlengthCount sequence length
g_get_sequenceGet sequence
infdmy database list of data frame
inflmy database list
mf_load_dataload data base
pipePipe operator
araezopsis/bioseqr documentation built on Feb. 22, 2018, 9:36 a.m.