Files in ashiklom/edr-da
ED2 RTM testing functions
.Rbuildignore
.Rprofile
.dir-locals.el
.gitignore
.here
DESCRIPTION
Makefile
NAMESPACE
R/RcppExports.R
R/create_prior.R
R/drake_functions.R
R/ed_allometry.R
R/ed_pft_mapping.R
R/edr_r.R
R/get_ipft.R
R/get_merra.R
R/get_pfts.R
R/hapke_soil.R
R/height_allometry.R
R/internal_data.R
R/landsat.R
R/load_observations.R
R/params2edr.R
R/pda_edr.R
R/priors.R
R/read_site.R
R/run_edr_date.R
R/run_simulation_sail.R
R/sample_params_prospect.R
R/sample_params_sail.R
R/soil_texture_codes.R
R/solar-angle.R
R/spec_ci.R
R/specfile.R
R/sw_two_stream.R
R/sysdata.rda
R/with_prog.R
R/zzz.imports.R
README.md
_drake.R
aviris/NASA_FFT/allPlotsAggregated_NIT_A_SpecJoined.csv
aviris/NASA_FFT/aviris_c_wavelength.csv
aviris/aviris.h5
aviris/aviris.rds
aviris/avirisc-flightlines.csv
data-raw/.gitignore
data-raw/internal_data.R
drake/functions.R
drake/globals.R
drake/packages.R
drake/plan.R
ed-inputs/EDI/ed_inputs/chd/temp.chd.avg.dat
ed-inputs/EDI/ed_inputs/dgd/temp.dgd.avg.dat
ed-inputs/EDI/oge2OLD/OGE2_30N090W.h5
ed-inputs/EDI/oge2OLD/OGE2_30N120W.h5
ed-inputs/EDI/oge2OLD/OGE2_HEADER
ed-inputs/istem-posteriors/processed.rds
ed-inputs/met3/US-Syv/ED_MET_DRIVER_HEADER.template
ed-inputs/met3/US-Syv/US-Syv_2001AUG.h5
ed-inputs/met3/US-Syv/US-Syv_2001JUL.h5
ed-inputs/met3/US-Syv/US-Syv_2001JUN.h5
ed-inputs/met3/US-Syv/US-Syv_2004AUG.h5
ed-inputs/met3/US-Syv/US-Syv_2004JUL.h5
ed-inputs/met3/US-Syv/US-Syv_2004JUN.h5
ed-inputs/met3/US-WCr/ED_MET_DRIVER_HEADER.template
ed-inputs/met3/US-WCr/US-WCr_2004AUG.h5
ed-inputs/met3/US-WCr/US-WCr_2004JUL.h5
ed-inputs/met3/US-WCr/US-WCr_2004JUN.h5
ed-inputs/met3/US-WCr/US-WCr_2006APR.h5
ed-inputs/met3/US-WCr/US-WCr_2006AUG.h5
ed-inputs/met3/US-WCr/US-WCr_2006DEC.h5
ed-inputs/met3/US-WCr/US-WCr_2006FEB.h5
ed-inputs/met3/US-WCr/US-WCr_2006JAN.h5
ed-inputs/met3/US-WCr/US-WCr_2006JUL.h5
ed-inputs/met3/US-WCr/US-WCr_2006JUN.h5
ed-inputs/met3/US-WCr/US-WCr_2006MAR.h5
ed-inputs/met3/US-WCr/US-WCr_2006MAY.h5
ed-inputs/met3/US-WCr/US-WCr_2006NOV.h5
ed-inputs/met3/US-WCr/US-WCr_2006OCT.h5
ed-inputs/met3/US-WCr/US-WCr_2006SEP.h5
ed-inputs/sites/BH02_site_1-25665/FFT.2008.lat43.3724lon-89.9071.css
ed-inputs/sites/BH02_site_1-25665/FFT.2008.lat43.3724lon-89.9071.pss
ed-inputs/sites/BH02_site_1-25665/FFT.2008.lat43.3724lon-89.9071.site
ed-inputs/sites/BI01_site_1-25676/FFT.2010.lat43.6519lon-89.7885.css
ed-inputs/sites/BI01_site_1-25676/FFT.2010.lat43.6519lon-89.7885.pss
ed-inputs/sites/BI01_site_1-25676/FFT.2010.lat43.6519lon-89.7885.site
ed-inputs/sites/BI02_site_1-25673/FFT.2008.lat43.652lon-89.7916.css
ed-inputs/sites/BI02_site_1-25673/FFT.2008.lat43.652lon-89.7916.pss
ed-inputs/sites/BI02_site_1-25673/FFT.2008.lat43.652lon-89.7916.site
ed-inputs/sites/BI03_site_1-25677/FFT.2008.lat43.6507lon-89.79.css
ed-inputs/sites/BI03_site_1-25677/FFT.2008.lat43.6507lon-89.79.pss
ed-inputs/sites/BI03_site_1-25677/FFT.2008.lat43.6507lon-89.79.site
ed-inputs/sites/GR08_site_1-25681/FFT.2008.lat39.695lon-78.4661.css
ed-inputs/sites/GR08_site_1-25681/FFT.2008.lat39.695lon-78.4661.pss
ed-inputs/sites/GR08_site_1-25681/FFT.2008.lat39.695lon-78.4661.site
ed-inputs/sites/IDS05_site_1-25682/FFT.2008.lat39.6533lon-78.4968.css
ed-inputs/sites/IDS05_site_1-25682/FFT.2008.lat39.6533lon-78.4968.pss
ed-inputs/sites/IDS05_site_1-25682/FFT.2008.lat39.6533lon-78.4968.site
ed-inputs/sites/IDS10_site_1-25683/FFT.2008.lat39.6731lon-78.423.css
ed-inputs/sites/IDS10_site_1-25683/FFT.2008.lat39.6731lon-78.423.pss
ed-inputs/sites/IDS10_site_1-25683/FFT.2008.lat39.6731lon-78.423.site
ed-inputs/sites/NC22_site/FFT.2010.lat45.5lon-90.5.css
ed-inputs/sites/NC22_site/FFT.2010.lat45.5lon-90.5.pss
ed-inputs/sites/NC22_site/FFT.2010.lat45.5lon-90.5.site
ed-inputs/sites/OF04_site_1-25709/FFT.2009.lat46.2674lon-89.3014.css
ed-inputs/sites/OF04_site_1-25709/FFT.2009.lat46.2674lon-89.3014.pss
ed-inputs/sites/OF04_site_1-25709/FFT.2009.lat46.2674lon-89.3014.site
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ed-inputs/sites/OF05_site_1-25710/FFT.2009.lat46.3023lon-89.2381.site
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ed-inputs/sites/PB03_site_1-25711/FFT.2008.lat46.7961lon-90.9486.pss
ed-inputs/sites/PB03_site_1-25711/FFT.2008.lat46.7961lon-90.9486.site
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ed-inputs/sites/PB09_site_1-25715/FFT.2008.lat46.4325lon-91.5199.pss
ed-inputs/sites/PB09_site_1-25715/FFT.2008.lat46.4325lon-91.5199.site
ed-inputs/sites/PB10_site_1-25716/FFT.2008.lat46.4331lon-91.5476.css
ed-inputs/sites/PB10_site_1-25716/FFT.2008.lat46.4331lon-91.5476.pss
ed-inputs/sites/PB10_site_1-25716/FFT.2008.lat46.4331lon-91.5476.site
ed-inputs/sites/PB13_site_1-25719/FFT.2008.lat46.1367lon-91.9892.css
ed-inputs/sites/PB13_site_1-25719/FFT.2008.lat46.1367lon-91.9892.pss
ed-inputs/sites/PB13_site_1-25719/FFT.2008.lat46.1367lon-91.9892.site
ed-inputs/sites/SF01_site_1-25720/FFT.2009.lat47.8385lon-91.6748.css
ed-inputs/sites/SF01_site_1-25720/FFT.2009.lat47.8385lon-91.6748.pss
ed-inputs/sites/SF01_site_1-25720/FFT.2009.lat47.8385lon-91.6748.site
ed-inputs/sites/US-WCr/NASA_FFT/US-WCr.Inv2010.NC22.lat45.5lon-90.5.css
ed-inputs/sites/US-WCr/NASA_FFT/US-WCr.Inv2010.NC22.lat45.5lon-90.5.pss
ed-inputs/sites/US-WCr/NASA_FFT/US-WCr.Inv2010.NC22.lat45.5lon-90.5.site
ed-inputs/sites/US-WCr/inventory_census/inventory_census.css
ed-inputs/sites/US-WCr/inventory_census/inventory_census.pss
ed-inputs/spectra/soil_reflect_par.dat
ed-inputs/spectra/test_soil.dat
ed-inputs/spectra/test_soil_2.dat.txt
inst/ED2IN
inst/ed_state_vars.csv
inst/pfts-species.csv
man/allom_Sigma.Rd
man/allom_mu.Rd
man/apply_filter_specfile.Rd
man/check_prior.Rd
man/combine_logical.Rd
man/cos_solar_zenith_angle.Rd
man/create_prior.Rd
man/dbh2h.Rd
man/ed_pft_mapping.Rd
man/edr_r.Rd
man/equation_of_time.Rd
man/filter_specfile.Rd
man/get_ipft.Rd
man/get_merra_date.Rd
man/get_pfts.Rd
man/get_site_prefix.Rd
man/hapke_soil.Rd
man/l5bands.Rd
man/load_observations.Rd
man/params2edr.Rd
man/pft_lookup.Rd
man/rallom1.Rd
man/rallom2.Rd
man/rclumping.Rd
man/reexports.Rd
man/ribbon.Rd
man/rmvnorm_positive.Rd
man/run_edr_date.Rd
man/run_pda_edr.Rd
man/run_simulation_sail.Rd
man/sample_params_prior.Rd
man/sample_params_sail.Rd
man/size2bl.Rd
man/spec2landsat.Rd
man/spec_ci.Rd
man/sw_two_stream.Rd
man/texture_codes.Rd
man/wai_allometry.Rd
man/wallom_Sigma.Rd
man/wallom_mu.Rd
man/with_prog.Rd
man/wood_spectrum.Rd
other_site_data/NASA_FFT_LAI_FPAR_Data.csv
other_site_data/landsat_data.csv
other_site_data/landsat_time_series/AK60/blue.csv
other_site_data/landsat_time_series/AK60/green.csv
other_site_data/landsat_time_series/AK60/nir.csv
other_site_data/landsat_time_series/AK60/red.csv
other_site_data/landsat_time_series/AK60/swir1.csv
other_site_data/landsat_time_series/AK60/swir2.csv
other_site_data/landsat_time_series/BH05/blue.csv
other_site_data/landsat_time_series/BH05/green.csv
other_site_data/landsat_time_series/BH05/nir.csv
other_site_data/landsat_time_series/BH05/red.csv
other_site_data/landsat_time_series/BH05/swir1.csv
other_site_data/landsat_time_series/BH05/swir2.csv
other_site_data/landsat_time_series/BH07/blue.csv
other_site_data/landsat_time_series/BH07/green.csv
other_site_data/landsat_time_series/BH07/nir.csv
other_site_data/landsat_time_series/BH07/red.csv
other_site_data/landsat_time_series/BH07/swir1.csv
other_site_data/landsat_time_series/BH07/swir2.csv
other_site_data/landsat_time_series/IDS36/blue.csv
other_site_data/landsat_time_series/IDS36/green.csv
other_site_data/landsat_time_series/IDS36/nir.csv
other_site_data/landsat_time_series/IDS36/red.csv
other_site_data/landsat_time_series/IDS36/swir1.csv
other_site_data/landsat_time_series/IDS36/swir2.csv
other_site_data/landsat_time_series/OF02/blue.csv
other_site_data/landsat_time_series/OF02/green.csv
other_site_data/landsat_time_series/OF02/nir.csv
other_site_data/landsat_time_series/OF02/red.csv
other_site_data/landsat_time_series/OF02/swir1.csv
other_site_data/landsat_time_series/OF02/swir2.csv
other_site_data/landsat_time_series/OF05/blue.csv
other_site_data/landsat_time_series/OF05/green.csv
other_site_data/landsat_time_series/OF05/nir.csv
other_site_data/landsat_time_series/OF05/red.csv
other_site_data/landsat_time_series/OF05/swir1.csv
other_site_data/landsat_time_series/OF05/swir2.csv
other_site_data/landsat_time_series/SF03/blue.csv
other_site_data/landsat_time_series/SF03/green.csv
other_site_data/landsat_time_series/SF03/nir.csv
other_site_data/landsat_time_series/SF03/red.csv
other_site_data/landsat_time_series/SF03/swir1.csv
other_site_data/landsat_time_series/SF03/swir2.csv
other_site_data/selected_sites
other_site_data/site_data.csv
other_site_data/site_list
other_site_data/site_structure.csv
other_site_data/soil_texture.csv
priors/allometry_stats.rds
priors/mvtraits_priors.RData
priors/prior_all.RData
priors/stan_priors_sun.RData
priors/sunlit_meanjp.RData
priors/wood_allometry_stats.rds
renv.lock
renv/.gitignore
renv/activate.R
renv/settings.dcf
scripts/01-download-merra.R
scripts/02-process-aviris.R
scripts/03-prepare-inversion.R
scripts/04-run-inversion.R
scripts/allometry_priors.R
scripts/ed2/check_ed_met.R
scripts/ed2/download_site_narr.R
scripts/ed2/figures/.gitignore
scripts/ed2/figures/calibration.R
scripts/ed2/figures/landsat_ts_plot.R
scripts/ed2/figures/pda_validation.R
scripts/ed2/figures/simulation_example.R
scripts/ed2/figures/structure_density_plot.R
scripts/ed2/get_soils.R
scripts/ed2/pda.R
scripts/ed2/sensitivity.R
scripts/load_istem_posteriors.R
scripts/load_site_data.R
scripts/nasa-highlight.R
scripts/posterior-constraint.R
scripts/srun_multi_site.sh
scripts/upload-inversion-data
scripts/zz_scratch.R
sites/AK06/FFT.2009.lat44.3211lon-73.8991.css
sites/AK06/FFT.2009.lat44.3211lon-73.8991.pss
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