Files in ashiklom/edr-da
ED2 RTM testing functions

.gitignore
.here
DESCRIPTION
NAMESPACE
R/extend_df.R R/generate_run.R R/get_edvar.R R/get_pfts.R R/params_df2list.R R/pda_edr.R R/run_ed.R R/run_edr.R R/run_simulation_edr.R R/run_simulation_sail.R R/sample_params_edr.R R/sample_params_prospect.R R/sample_params_sail.R R/set_param.R R/setup_fft.R R/spec_ci.R R/specfile.R README.md
aviris/NASA_FFT/allPlotsAggregated_NIT_A_SpecJoined.csv
aviris/NASA_FFT/aviris_c_wavelength.csv
aviris/aviris.h5
cleanup.sh
config.example.R
data/css_ex1.RData
data/pss_ex1.RData
data/site_ex1.RData
ed-inputs/EDI/ed_inputs/chd/temp.chd.avg.dat
ed-inputs/EDI/ed_inputs/dgd/temp.dgd.avg.dat
ed-inputs/EDI/oge2OLD/OGE2_30N090W.h5
ed-inputs/EDI/oge2OLD/OGE2_30N120W.h5
ed-inputs/EDI/oge2OLD/OGE2_HEADER
ed-inputs/met3/US-Syv/ED_MET_DRIVER_HEADER.template
ed-inputs/met3/US-Syv/US-Syv_2001AUG.h5
ed-inputs/met3/US-Syv/US-Syv_2001JUL.h5
ed-inputs/met3/US-Syv/US-Syv_2001JUN.h5
ed-inputs/met3/US-Syv/US-Syv_2004AUG.h5
ed-inputs/met3/US-Syv/US-Syv_2004JUL.h5
ed-inputs/met3/US-Syv/US-Syv_2004JUN.h5
ed-inputs/met3/US-WCr/ED_MET_DRIVER_HEADER.template
ed-inputs/met3/US-WCr/US-WCr_2004AUG.h5
ed-inputs/met3/US-WCr/US-WCr_2004JUL.h5
ed-inputs/met3/US-WCr/US-WCr_2004JUN.h5
ed-inputs/met3/US-WCr/US-WCr_2006APR.h5
ed-inputs/met3/US-WCr/US-WCr_2006AUG.h5
ed-inputs/met3/US-WCr/US-WCr_2006DEC.h5
ed-inputs/met3/US-WCr/US-WCr_2006FEB.h5
ed-inputs/met3/US-WCr/US-WCr_2006JAN.h5
ed-inputs/met3/US-WCr/US-WCr_2006JUL.h5
ed-inputs/met3/US-WCr/US-WCr_2006JUN.h5
ed-inputs/met3/US-WCr/US-WCr_2006MAR.h5
ed-inputs/met3/US-WCr/US-WCr_2006MAY.h5
ed-inputs/met3/US-WCr/US-WCr_2006NOV.h5
ed-inputs/met3/US-WCr/US-WCr_2006OCT.h5
ed-inputs/met3/US-WCr/US-WCr_2006SEP.h5
ed-inputs/sites/BH02_site_1-25665/FFT.2008.lat43.3724lon-89.9071.css
ed-inputs/sites/BH02_site_1-25665/FFT.2008.lat43.3724lon-89.9071.pss
ed-inputs/sites/BH02_site_1-25665/FFT.2008.lat43.3724lon-89.9071.site
ed-inputs/sites/BI01_site_1-25676/FFT.2010.lat43.6519lon-89.7885.css
ed-inputs/sites/BI01_site_1-25676/FFT.2010.lat43.6519lon-89.7885.pss
ed-inputs/sites/BI01_site_1-25676/FFT.2010.lat43.6519lon-89.7885.site
ed-inputs/sites/BI02_site_1-25673/FFT.2008.lat43.652lon-89.7916.css
ed-inputs/sites/BI02_site_1-25673/FFT.2008.lat43.652lon-89.7916.pss
ed-inputs/sites/BI02_site_1-25673/FFT.2008.lat43.652lon-89.7916.site
ed-inputs/sites/BI03_site_1-25677/FFT.2008.lat43.6507lon-89.79.css
ed-inputs/sites/BI03_site_1-25677/FFT.2008.lat43.6507lon-89.79.pss
ed-inputs/sites/BI03_site_1-25677/FFT.2008.lat43.6507lon-89.79.site
ed-inputs/sites/GR08_site_1-25681/FFT.2008.lat39.695lon-78.4661.css
ed-inputs/sites/GR08_site_1-25681/FFT.2008.lat39.695lon-78.4661.pss
ed-inputs/sites/GR08_site_1-25681/FFT.2008.lat39.695lon-78.4661.site
ed-inputs/sites/IDS05_site_1-25682/FFT.2008.lat39.6533lon-78.4968.css
ed-inputs/sites/IDS05_site_1-25682/FFT.2008.lat39.6533lon-78.4968.pss
ed-inputs/sites/IDS05_site_1-25682/FFT.2008.lat39.6533lon-78.4968.site
ed-inputs/sites/IDS10_site_1-25683/FFT.2008.lat39.6731lon-78.423.css
ed-inputs/sites/IDS10_site_1-25683/FFT.2008.lat39.6731lon-78.423.pss
ed-inputs/sites/IDS10_site_1-25683/FFT.2008.lat39.6731lon-78.423.site
ed-inputs/sites/NC22_site/FFT.2010.lat45.5lon-90.5.css
ed-inputs/sites/NC22_site/FFT.2010.lat45.5lon-90.5.pss
ed-inputs/sites/NC22_site/FFT.2010.lat45.5lon-90.5.site
ed-inputs/sites/OF04_site_1-25709/FFT.2009.lat46.2674lon-89.3014.css
ed-inputs/sites/OF04_site_1-25709/FFT.2009.lat46.2674lon-89.3014.pss
ed-inputs/sites/OF04_site_1-25709/FFT.2009.lat46.2674lon-89.3014.site
ed-inputs/sites/OF05_site_1-25710/FFT.2009.lat46.3023lon-89.2381.css
ed-inputs/sites/OF05_site_1-25710/FFT.2009.lat46.3023lon-89.2381.pss
ed-inputs/sites/OF05_site_1-25710/FFT.2009.lat46.3023lon-89.2381.site
ed-inputs/sites/PB03_site_1-25711/FFT.2008.lat46.7961lon-90.9486.css
ed-inputs/sites/PB03_site_1-25711/FFT.2008.lat46.7961lon-90.9486.pss
ed-inputs/sites/PB03_site_1-25711/FFT.2008.lat46.7961lon-90.9486.site
ed-inputs/sites/PB09_site_1-25715/FFT.2008.lat46.4325lon-91.5199.css
ed-inputs/sites/PB09_site_1-25715/FFT.2008.lat46.4325lon-91.5199.pss
ed-inputs/sites/PB09_site_1-25715/FFT.2008.lat46.4325lon-91.5199.site
ed-inputs/sites/PB10_site_1-25716/FFT.2008.lat46.4331lon-91.5476.css
ed-inputs/sites/PB10_site_1-25716/FFT.2008.lat46.4331lon-91.5476.pss
ed-inputs/sites/PB10_site_1-25716/FFT.2008.lat46.4331lon-91.5476.site
ed-inputs/sites/PB13_site_1-25719/FFT.2008.lat46.1367lon-91.9892.css
ed-inputs/sites/PB13_site_1-25719/FFT.2008.lat46.1367lon-91.9892.pss
ed-inputs/sites/PB13_site_1-25719/FFT.2008.lat46.1367lon-91.9892.site
ed-inputs/sites/SF01_site_1-25720/FFT.2009.lat47.8385lon-91.6748.css
ed-inputs/sites/SF01_site_1-25720/FFT.2009.lat47.8385lon-91.6748.pss
ed-inputs/sites/SF01_site_1-25720/FFT.2009.lat47.8385lon-91.6748.site
ed-inputs/sites/US-WCr/NASA_FFT/US-WCr.Inv2010.NC22.lat45.5lon-90.5.css
ed-inputs/sites/US-WCr/NASA_FFT/US-WCr.Inv2010.NC22.lat45.5lon-90.5.pss
ed-inputs/sites/US-WCr/NASA_FFT/US-WCr.Inv2010.NC22.lat45.5lon-90.5.site
ed-inputs/sites/US-WCr/inventory_census/inventory_census.css
ed-inputs/sites/US-WCr/inventory_census/inventory_census.pss
ed-inputs/spectra/soil_reflect_par.dat
ed-inputs/spectra/test_soil.dat
ed-inputs/spectra/test_soil_2.dat.txt
examples/EDR_forward_simulation.R examples/MultiPlot_EDR_forward_simulation.R examples/inversion.R examples/inversion_bayestools.R examples/inversion_progress_diagnostic.R examples/inversion_single.R examples/plot_diagnostics.R examples/plot_diagnostics_bayestools.R examples/prior_sensitivity.R examples/sensitivity_analysis.R examples/single_run.R
examples/submit_scripts/qsub_command.txt
examples/submit_scripts/submit.rtm.inversion.modex.sh
inst/ED2IN
inversion/.gitignore
inversion/deprecated/Makefile
inversion/deprecated/common.R inversion/deprecated/inv.cos.R inversion/deprecated/inversion_ps.R inversion/deprecated/inversion_ps.multiPFT.US-WCr.multivariate.prior.R inversion/deprecated/inversion_ps.prior.R inversion/deprecated/inversion_ps.singlePFT.multivariate.prior.R inversion/deprecated/multipft_sensitivity.R inversion/deprecated/plot_diagnostics.R inversion/deprecated/readhdf5.R inversion/deprecated/sensitivity.R inversion/single_pft/temperate.Early_Hardwood/tests/sla_test.R inversion/single_pft/temperate.Late_Hardwood/inversion_single.R inversion/single_pft/temperate.Late_Hardwood/tests/sla_test.R inversion/single_pft/temperate.North_Mid_Hardwood/tests/sla_test.R inversion/single_pft/tests/clumping_test.R inversion/single_pft/tests/quicktest.R inversion/single_pft/tests/sla_test.R
inversion/submit_scripts/qsub_command.txt
inversion/submit_scripts/submit.rtm.inversion.modex.sh
man/apply_filter_specfile.Rd man/combine_logical.Rd man/exec_in_dir.Rd man/extend_df.Rd man/filter_specfile.Rd man/generate_run.Rd man/get_edvar.Rd man/get_pfts.Rd man/param_sub.Rd man/pft_lookup.Rd man/ribbon.Rd man/run_ed.Rd man/run_edr.Rd man/run_pda_edr.Rd man/run_simulation_edr.Rd man/run_simulation_sail.Rd man/sample_params_edr.Rd man/sample_params_prior.Rd man/sample_params_sail.Rd man/setup_edr.Rd man/setup_fft.Rd man/spec_ci.Rd man/vec2list.Rd
other_site_data/NASA_FFT_LAI_FPAR_Data.csv
priors/mvtraits_priors.RData
priors/prior_all.RData
priors/stan_priors_sun.RData
priors/sunlit_meanjp.RData
scripts/pda.R scripts/process_aviris.R scripts/sensitivity.R testruns/generate_testrun_functions.R testruns/generate_testrun_multi_cohort_USWCr.R testruns/generate_testrun_single_cohort_USSyv.R testruns/generate_testrun_single_cohort_USWCr.R testruns/generate_testrun_two_cohort_USWCr.R tests/testthat.R tests/testthat/test.ed_and_edr.R
ashiklom/edr-da documentation built on May 22, 2019, 2:26 p.m.