knitr::opts_chunk$set( collapse = TRUE, comment = "#>" )
Vignettes are long form documentation commonly included in packages. Because they are part of the distribution of the package, they need to be as compact as possible. The html_vignette
output type provides a custom style sheet (and tweaks some options) to ensure that the resulting html is as small as possible. The html_vignette
format:
Note the various macros within the vignette
section of the metadata block above. These are required in order to instruct R how to build the vignette. Note that you should change the title
field and the \VignetteIndexEntry
to match the title of your vignette.
The html_vignette
template includes a basic CSS theme. To override this theme you can specify your own CSS in the document metadata as follows:
output: rmarkdown::html_vignette: css: mystyles.css
The figure sizes have been customized so that you can easily put two images side-by-side.
plot(1:10) plot(10:1)
library(nationalpark) # See all palettes names(nationalpark) #> [1] "BottleRocket1" "BottleRocket2" "Rushmore1" "Rushmore" #> [5] "Royal1" "Royal2" "Zissou1" "Darjeeling1" #> [9] "Darjeeling2" "Chevalier1" "FantasticFox1" "Moonrise1" #> [13] "Moonrise2" "Moonrise3" "Cavalcanti1" "GrandBudapest1" #> [17] "GrandBudapest2" "IsleofDogs1" "IsleofDogs2"
np_palette("rockymtn")
np_palette("tallgrass")
library("ggplot2") ggplot(mtcars, aes(factor(cyl), fill=factor(vs))) + geom_bar() + scale_fill_manual(values = np_palette("tallgrass"))
You can enable figure captions by
fig_caption: yes
in YAML:
output: rmarkdown::html_vignette: fig_caption: yes
Then you can use the chunk option fig.cap = "Your figure caption."
in knitr.
You can write math expressions, e.g. $Y = X\beta + \epsilon$, footnotes^[A footnote here.], and tables, e.g. using knitr::kable()
.
knitr::kable(head(mtcars, 10))
Also a quote using >
:
"He who gives up [code] safety for [code] speed deserves neither." (via)
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.