Files in baba-beda/morpheusR
Visual and interactive gene expression analysis

.Rbuildignore
.gitignore
.gitmodules
.travis.yml
DESCRIPTION
LICENSE
NAMESPACE
NEWS
R/calcPCA.R R/createES.R R/es-data.R R/gseaPlot.R R/limmaAnalysis.R R/loadGEO.R R/loadPreloaded.R R/performKmeans.R R/serve.R R/shinyGAM.R R/utils.R README.md
appveyor.yml
data/es.rda
inst/docker/develop/Dockerfile
inst/docker/latest/Dockerfile
inst/extdata/centers.gct
inst/gen_toy_mouse_matrix_h5.R
inst/test_js.sh
inst/testdata/GSE27112-GPL6103.rda
inst/testdata/aa.rda
inst/testdata/centers.gct
inst/testdata/dts.tsv
inst/testdata/mouse_matrix.h5
inst/testdata/rows
inst/testdata/wrapped_aa.rda
inst/testdata/wrapped_wrongFormat.rda
inst/testdata/wrongFormatFile.rda
inst/update_static.sh
inst/www/phantasus.js/commit
inst/www/phantasus.js/css/images/icon.svg
inst/www/phantasus.js/css/images/ui-icons_444444_256x240.png
inst/www/phantasus.js/css/images/ui-icons_555555_256x240.png
inst/www/phantasus.js/css/images/ui-icons_777620_256x240.png
inst/www/phantasus.js/css/images/ui-icons_777777_256x240.png
inst/www/phantasus.js/css/images/ui-icons_cc0000_256x240.png
inst/www/phantasus.js/css/images/ui-icons_ffffff_256x240.png
inst/www/phantasus.js/css/phantasus-latest.min.css
inst/www/phantasus.js/css/phantasus.all.css
inst/www/phantasus.js/favicon.ico
inst/www/phantasus.js/fonts/FontAwesome.otf
inst/www/phantasus.js/fonts/fontawesome-webfont.eot
inst/www/phantasus.js/fonts/fontawesome-webfont.svg
inst/www/phantasus.js/fonts/fontawesome-webfont.ttf
inst/www/phantasus.js/fonts/fontawesome-webfont.woff
inst/www/phantasus.js/fonts/fontawesome-webfont.woff2
inst/www/phantasus.js/index.html
inst/www/phantasus.js/jasmine/SpecRunner.html
inst/www/phantasus.js/jasmine/lib/jasmine-2.5.2/boot.js
inst/www/phantasus.js/jasmine/lib/jasmine-2.5.2/console.js
inst/www/phantasus.js/jasmine/lib/jasmine-2.5.2/jasmine-html.js
inst/www/phantasus.js/jasmine/lib/jasmine-2.5.2/jasmine.css
inst/www/phantasus.js/jasmine/lib/jasmine-2.5.2/jasmine.js
inst/www/phantasus.js/jasmine/lib/jasmine-2.5.2/jasmine_favicon.png
inst/www/phantasus.js/jasmine/matchers/custom.js
inst/www/phantasus.js/jasmine/run_ocpu.js
inst/www/phantasus.js/jasmine/spec/adjust_tool_test.js
inst/www/phantasus.js/jasmine/spec/bivariate_functions_test.js
inst/www/phantasus.js/jasmine/spec/buffered_reader_test.js
inst/www/phantasus.js/jasmine/spec/collapse_tool_test.js
inst/www/phantasus.js/jasmine/spec/dataset_test.js
inst/www/phantasus.js/jasmine/spec/geo_reader_test.js
inst/www/phantasus.js/jasmine/spec/marker_selection_test.js
inst/www/phantasus.js/jasmine/spec/nearest_neighbors_test.js
inst/www/phantasus.js/jasmine/spec/preloaded_reader_test.js
inst/www/phantasus.js/jasmine/spec/qnorm_test.js
inst/www/phantasus.js/jasmine/spec/ranking_test.js
inst/www/phantasus.js/jasmine/spec/save_dataset_test.js
inst/www/phantasus.js/jasmine/spec/set_test.js
inst/www/phantasus.js/jasmine/spec/univariate_functions_test.js
inst/www/phantasus.js/jasmine/test_files/CCLE_hybrid_capture1650_hg19_NoCommonSNPs_NoNeutralVariants_CDS_2012.05.07.maf.txt
inst/www/phantasus.js/jasmine/test_files/all_aml_train.gct
inst/www/phantasus.js/jasmine/test_files/aml_aml_train_marker_selection.gct
inst/www/phantasus.js/jasmine/test_files/aml_aml_train_nearest_neighbors_D50692_at.gct
inst/www/phantasus.js/jasmine/test_files/qnorm.gct
inst/www/phantasus.js/jasmine/test_files/simple_windows_test.txt
inst/www/phantasus.js/js/phantasus-external-other.min.js
inst/www/phantasus.js/js/phantasus-external-pdfkit-xlsx.min.js
inst/www/phantasus.js/js/phantasus-external-plotly-echarts.min.js
inst/www/phantasus.js/js/phantasus.js
inst/www/phantasus.js/linking.html
inst/www/phantasus.js/message.proto
inst/www/phantasus.js/my.conf.js
inst/www/phantasus.js/package.json
inst/www/phantasus.js/phantasus-tutorial.html
inst/www/phantasus.js/server.js
inst/www/phantasus.js/sw.js
inst/www/phantasus.js/tutorial.html
man/calcPCA.Rd man/checkGPLs.Rd man/checkPreloadedNames.Rd man/createES.Rd man/es.Rd man/getES.Rd man/getGDS.Rd man/getGSE.Rd man/gseaPlot.Rd man/limmaAnalysis.Rd man/loadGEO.Rd man/loadPreloaded.Rd man/performKmeans.Rd man/preloadedDirExists.Rd man/read.gct.Rd man/reparseCachedESs.Rd man/servePhantasus.Rd man/shinyGAMAnalysis.Rd man/subsetES.Rd man/write.gct.Rd
phantasus.Rproj
tests/testthat.R tests/testthat/testcreateES.R tests/testthat/testgct.R tests/testthat/testkmeans.R tests/testthat/testlimmaAnalysis.R tests/testthat/testloadGEO.R tests/testthat/testloadPreloaded.R tests/testthat/testpcaPlot.R tests/testthat/testutilfunctions.R vignettes/developer-tutorial.Rmd
vignettes/images/adjust_tool.jpg
vignettes/images/calculated_annotation_loaded.jpg
vignettes/images/calculated_annotation_tool.jpg
vignettes/images/collapse_tool.jpg
vignettes/images/dataset_loaded.jpg
vignettes/images/duplicates.jpg
vignettes/images/enrichr.png
vignettes/images/enrichr_result.png
vignettes/images/filter_tool.jpg
vignettes/images/filter_tool_result.jpg
vignettes/images/good_samples.jpg
vignettes/images/gse14308_norm.png
vignettes/images/hierarchical_tool.jpg
vignettes/images/huge_value.jpg
vignettes/images/kmeans_result.jpg
vignettes/images/kmeans_tool.jpg
vignettes/images/limma_results.png
vignettes/images/limma_tool.jpg
vignettes/images/open_file_tool.jpg
vignettes/images/pcaplot_tool_clean.png
vignettes/images/pcaplot_tool_finished.png
vignettes/images/shiny_gam.jpg
vignettes/images/shiny_gam_result.jpg
vignettes/images/start_screen.jpg
vignettes/phantasus-tutorial.Rmd
baba-beda/morpheusR documentation built on May 21, 2018, 4:41 a.m.