Files in bbakker1989/CINsim
Chromosomal Instability Simulator

CINsim.Rproj
Cinsim.config
DESCRIPTION
Figure 1/clone_list_rep1000.RData
Figure 1/figure_1.R
Figure 1/prob_list.RData
Figure 1/prob_list_human.RData
Figure 1/prob_list_mouse.RData
Figure 1/probablities.R
Figure 1/sim_list_fractions.RData
Figure 1/sim_list_threshold.RData
Figure 1/surProbs.R Figure 2/Figure 2.R Figure 2/qMods_list.R
Figure 2/sim_list_pmisseg.RData
Figure 2/sim_list_qMods.RData
NAMESPACE
R/CINsim.R R/CINsim2.R R/animateHistory.R R/appendCinsim.R R/calcClonality.R R/calcConvergence.R R/calcDivProb.R R/calcMisseg.R R/calcQmod.R R/calcSurProb.R R/calcSurProb2.R R/checkViability.R R/checkViabilityDavoli.R R/cnFreq.R R/cnFreqList.R R/cnFreqTidy.R R/cnvHeatmap.R R/cnvHeatmapList.R R/compareChromosomes.R R/compareSims.R R/compileTidyData.R R/devFromMode.R R/doMitosis.R R/firstMisseg.R R/getMode.R R/getParameters.R R/makeCinsimListTidy.R R/makeKaryotypeReplicates.R R/makeKaryotypes.R R/makeTidy.R R/parallelCinsim.R R/plotClonality.R R/plotClonalityList.R R/plotClonalityTidy.R R/plotDevFromMode.R R/plotKaryotypeMeasures.R R/plotKaryotypeMeasuresTidy.R R/plotListTidyData.R R/plotMissegFreq.R R/plotTidyData.R R/qAneuploidy.R R/qHeterogeneity.R R/rtnorm.R R/runParallelSims.R R/simPlots.R R/simPlotsTidy.R R/timedMessage.R README.md
data/Mad2.RData
data/Mad2_X.RData
data/Mad2_strict.RData
data/Mps1.RData
data/Mps1_X.RData
data/Mps1_strict.RData
data/chromScores.RData
data/neutral.RData
man/Cinsim.Rd man/Cinsim2.Rd man/animateHistory.Rd man/appendCinsim.Rd man/calcClonality.Rd man/calcConvergence.Rd man/calcDivProb.Rd man/calcMisseg.Rd man/calcQmod.Rd man/calcSurProb.Rd man/calcSurProb2.Rd man/checkViability.Rd man/checkViabilityDavoli.Rd man/cnFreq.Rd man/cnFreqList.Rd man/cnFreqTidy.Rd man/cnvHeatmap.Rd man/cnvHeatmapList.Rd man/compareChromosomes.Rd man/compareSims.Rd man/compileTidyData.Rd man/devFromMode.Rd man/doMitosis.Rd man/getMode.Rd man/getParameters.Rd man/makeCinsimListTidy.Rd man/makeCinsimTidy.Rd man/makeKaryotypeReplicates.Rd man/makeKaryotypes.Rd man/multiplot.Rd man/parallelCinSim.Rd man/parallelCinsim.Rd man/plotClonalitTidy.Rd man/plotClonality.Rd man/plotClonalityList.Rd man/plotDevFromMode.Rd man/plotFirstMisseg.Rd man/plotKaryotypeMeasures.Rd man/plotKaryotypeMeasuresTidy.Rd man/plotListTidyData.Rd man/plotMissegFreq.Rd man/plotTidyData.Rd man/qAneuploidy.Rd man/qHeterogeneity.Rd man/rtnorm.Rd man/runParallelSims.Rd man/simPlots.Rd man/simPlotsTidy.Rd man/startTimedMessage.Rd man/stopTimedMessage.Rd
bbakker1989/CINsim documentation built on May 7, 2018, 6:40 p.m.