Files in bbuchsbaum/neuroim2
Data Structures and Handling for Neuroimaging Data

.travis.yml
DESCRIPTION
NAMESPACE
R/RcppExports.R R/afni_io.R R/all_class.R R/all_generic.R R/array_like.R R/axis.R R/binary_io.R R/clustervol.R R/common.R R/conncomp.R R/datadoc.R R/file_format.R R/filebacked_neurovec.R R/index_vol.R R/mapped_neurovec.R R/meta_info.R R/neuro_obj.R R/neurohypervec.R R/neuroim.R R/neuroslice.R R/neurospace.R R/neurovec.R R/neurovol.R R/nifti_io.R R/niml_io.R R/ops.R R/pipeline.R R/roi.R R/searchlight.R R/sparse_neurovec.R README.Rmd README.md
_pkgdown.yml
codecov.yml
docs/404.html
docs/articles/FileIO.html
docs/articles/FileIO_files/figure-html/unnamed-chunk-12-1.png
docs/articles/ImageVolumes.html
docs/articles/ImageVolumes_files/figure-html/unnamed-chunk-12-1.png
docs/articles/NeuroVector.html
docs/articles/index.html
docs/articles/neuroim.html
docs/articles/pipelines.html
docs/articles/pipelines_files/figure-html/unnamed-chunk-2-1.png
docs/articles/pipelines_files/figure-html/unnamed-chunk-4-1.png
docs/articles/pipelines_files/figure-html/unnamed-chunk-5-1.png
docs/articles/pipelines_files/figure-html/unnamed-chunk-6-1.png
docs/articles/pipelines_files/figure-html/unnamed-chunk-7-1.png
docs/articles/regionOfInterest.html
docs/authors.html
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/jquery.sticky-kit.min.js
docs/link.svg
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/AFNIDescriptor-class.html
docs/reference/AFNIMetaInfo-class.html
docs/reference/AxisSet-class.html
docs/reference/AxisSet1D-class.html
docs/reference/AxisSet2D-class.html
docs/reference/AxisSet3D-class.html
docs/reference/AxisSet4D-class.html
docs/reference/AxisSet5D-class.html
docs/reference/BasisNeuroVec.html
docs/reference/BinaryReader-class.html
docs/reference/BinaryReader.html
docs/reference/BinaryWriter-class.html
docs/reference/BrainBasisVector.html
docs/reference/BrainBucket-class.html
docs/reference/ClusteredNeuroVol-class.html
docs/reference/ColumnReader-class.html
docs/reference/ColumnReader.html
docs/reference/DenseNeuroVec-class.html
docs/reference/DenseNeuroVol-class.html
docs/reference/FileBackedNeuroVec-class.html
docs/reference/FileBackedNeuroVec.html
docs/reference/FileFormat-class.html
docs/reference/FileMetaInfo-class.html
docs/reference/FileSource-class.html
docs/reference/IndexLookupVol-class.html
docs/reference/Kernel-class.html
docs/reference/Kernel.html
docs/reference/LogicalNeuroVol-class.html
docs/reference/MNI_SPACE_1MM.html
docs/reference/MappedNeuroVec-class.html
docs/reference/MappedNeuroVecSource-class.html
docs/reference/MetaInfo-class.html
docs/reference/NIFTIFileDescriptor-class.html
docs/reference/NIFTIMetaInfo-class.html
docs/reference/NamedAxis-class.html
docs/reference/NeuroBucket-class.html
docs/reference/NeuroObj-class.html
docs/reference/NeuroSlice-class.html
docs/reference/NeuroSlice.html
docs/reference/NeuroSpace-class.html
docs/reference/NeuroVec-class.html
docs/reference/NeuroVec-methods.html
docs/reference/NeuroVecSeq-class.html
docs/reference/NeuroVecSeq.html
docs/reference/NeuroVecSource-class.html
docs/reference/NeuroVecSource.html
docs/reference/NeuroVol-class.html
docs/reference/NeuroVol.html
docs/reference/NeuroVolSource-class.html
docs/reference/ROI-class.html
docs/reference/ROIVec-class.html
docs/reference/ROIVec.html
docs/reference/ROIVecWindow-class.html
docs/reference/ROIVol-class.html
docs/reference/ROIVol.html
docs/reference/ROIVolWindow-class.html
docs/reference/SparseNeuroVec-class.html
docs/reference/SparseNeuroVec-methods.html
docs/reference/SparseNeuroVecSource-class.html
docs/reference/SparseNeuroVol-class.html
docs/reference/add_dim-methods.html
docs/reference/as-methods.html
docs/reference/as.array-NeuroObj-method.html
docs/reference/as.dense-methods.html
docs/reference/as.list-methods.html
docs/reference/as.logical-methods.html
docs/reference/as.mask-methods.html
docs/reference/as.matrix-NeuroObj-method.html
docs/reference/as.matrix-methods.html
docs/reference/as.numeric-methods.html
docs/reference/as.sparse-methods.html
docs/reference/as.vector-NeuroObj-method.html
docs/reference/axes-methods.html
docs/reference/bootstrap_searchlight.html
docs/reference/bounds-methods.html
docs/reference/centroid-methods.html
docs/reference/close-methods.html
docs/reference/clustered_searchlight.html
docs/reference/concat-methods.html
docs/reference/conn_comp-methods.html
docs/reference/conn_comp_3D.html
docs/reference/coord_to_grid-methods.html
docs/reference/coord_to_index-methods.html
docs/reference/coords-methods.html
docs/reference/cuboid_roi.html
docs/reference/data_file-methods.html
docs/reference/data_file_matches-methods.html
docs/reference/data_reader-methods.html
docs/reference/deferred_list.html
docs/reference/deferred_list2.html
docs/reference/dim-FileMetaInfo-method.html
docs/reference/dim-NeuroObj-method.html
docs/reference/dim-NeuroSpace-method.html
docs/reference/dim-methods.html
docs/reference/dim_of-methods.html
docs/reference/drop-methods.html
docs/reference/drop_dim-methods.html
docs/reference/extractor3d.html
docs/reference/extractor4d.html
docs/reference/file_matches-methods.html
docs/reference/grid_to_coord-methods.html
docs/reference/grid_to_grid-methods.html
docs/reference/grid_to_index-methods.html
docs/reference/header_file-methods.html
docs/reference/header_file_matches-methods.html
docs/reference/hello.html
docs/reference/index.html
docs/reference/index_to_coord-methods.html
docs/reference/index_to_grid-methods.html
docs/reference/indices-methods.html
docs/reference/internal-methods.html
docs/reference/inverse_trans-methods.html
docs/reference/length-methods.html
docs/reference/linear_access-methods.html
docs/reference/loadData-methods.html
docs/reference/load_data-methods.html
docs/reference/lookup-methods.html
docs/reference/make_vector.html
docs/reference/make_vol.html
docs/reference/map-methods.html
docs/reference/map_values-methods.html
docs/reference/matchAnatomy2D.html
docs/reference/matchAnatomy3D.html
docs/reference/ndim-methods.html
docs/reference/neuro_space.html
docs/reference/neuroim2.html
docs/reference/num_clusters-methods.html
docs/reference/origin-methods.html
docs/reference/partition-methods.html
docs/reference/partition_by-methods.html
docs/reference/patch_set-methods.html
docs/reference/permMat-methods.html
docs/reference/perm_mat-methods.html
docs/reference/plot-methods.html
docs/reference/print-AxisSet2D-method.html
docs/reference/print-AxisSet3D-method.html
docs/reference/print-NamedAxis-method.html
docs/reference/print-methods.html
docs/reference/random_searchlight.html
docs/reference/read_afni_header.html
docs/reference/read_columns-methods.html
docs/reference/read_elements-methods.html
docs/reference/read_header.html
docs/reference/read_meta_info-methods.html
docs/reference/read_vec.html
docs/reference/read_vol.html
docs/reference/read_vol_list.html
docs/reference/render-methods.html
docs/reference/render_slice-methods.html
docs/reference/reorient-methods.html
docs/reference/scale_series-methods.html
docs/reference/searchlight.html
docs/reference/searchlight_coords.html
docs/reference/series-methods.html
docs/reference/show-AxisSet1D-method.html
docs/reference/show-AxisSet2D-method.html
docs/reference/show-AxisSet3D-method.html
docs/reference/show-AxisSet4D-method.html
docs/reference/show-ClusteredNeuroVol-method.html
docs/reference/show-FileMetaInfo-method.html
docs/reference/show-NamedAxis-method.html
docs/reference/show-NeuroSpace-method.html
docs/reference/show-NeuroVec-method.html
docs/reference/show-NeuroVecSource-method.html
docs/reference/show-NeuroVol-method.html
docs/reference/show-ROIVec-method.html
docs/reference/show-ROIVol-method.html
docs/reference/show-SparseNeuroVec-method.html
docs/reference/show-SparseNeuroVol-method.html
docs/reference/slice-methods.html
docs/reference/slices-methods.html
docs/reference/space-methods.html
docs/reference/spacing-methods.html
docs/reference/spherical_roi.html
docs/reference/split_blocks-methods.html
docs/reference/split_clusters-methods.html
docs/reference/split_fill-methods.html
docs/reference/split_reduce-methods.html
docs/reference/split_scale-methods.html
docs/reference/square_roi.html
docs/reference/strip_extension-methods.html
docs/reference/sub-ClusteredNeuroVol-matrix-missing-ANY-method.html
docs/reference/sub-ClusteredNeuroVol-missing-missing-ANY-method.html
docs/reference/sub-ClusteredNeuroVol-missing-numeric-ANY-method.html
docs/reference/sub-ClusteredNeuroVol-numeric-missing-missing-method.html
docs/reference/sub-ClusteredNeuroVol-numeric-numeric-ANY-method.html
docs/reference/sub-SparseNeuroVec-missing-missing-ANY-method.html
docs/reference/sub-SparseNeuroVec-missing-numeric-ANY-method.html
docs/reference/sub-SparseNeuroVec-numeric-missing-ANY-method.html
docs/reference/sub-SparseNeuroVec-numeric-numeric-ANY-method.html
docs/reference/sub-SparseNeuroVol-matrix-missing-ANY-method.html
docs/reference/sub-SparseNeuroVol-missing-missing-ANY-method.html
docs/reference/sub-SparseNeuroVol-missing-numeric-ANY-method.html
docs/reference/sub-SparseNeuroVol-numeric-missing-ANY-method.html
docs/reference/sub-SparseNeuroVol-numeric-missing-missing-method.html
docs/reference/sub-SparseNeuroVol-numeric-numeric-ANY-method.html
docs/reference/sub_vector-methods.html
docs/reference/trans-methods.html
docs/reference/values-methods.html
docs/reference/vectors-methods.html
docs/reference/vol_subset-methods.html
docs/reference/vols-methods.html
docs/reference/voxels-methods.html
docs/reference/which_dim-methods.html
docs/reference/write_elements-methods.html
docs/reference/write_vec-methods.html
docs/reference/write_vol-methods.html
inst/.DS_Store
inst/extdata/global_mask.nii
inst/extdata/global_mask2.nii.gz
inst/extdata/global_mask_v5.nii
inst/extdata/std.lh.smoothwm.asc
man/AFNIDescriptor-class.Rd man/AFNIMetaInfo-class.Rd man/AxisSet-class.Rd man/AxisSet1D-class.Rd man/AxisSet2D-class.Rd man/AxisSet3D-class.Rd man/AxisSet4D-class.Rd man/AxisSet5D-class.Rd man/BasisNeuroVec.Rd man/BinaryReader-class.Rd man/BinaryReader.Rd man/BinaryWriter-class.Rd man/ClusteredNeuroVol-class.Rd man/ColumnReader-class.Rd man/ColumnReader.Rd man/DenseNeuroVec-class.Rd man/DenseNeuroVol-class.Rd man/FileBackedNeuroVec-class.Rd man/FileBackedNeuroVec.Rd man/FileFormat-class.Rd man/FileMetaInfo-class.Rd man/FileSource-class.Rd man/IndexLookupVol-class.Rd man/Kernel-class.Rd man/Kernel.Rd man/LogicalNeuroVol-class.Rd man/MappedNeuroVec-class.Rd man/MappedNeuroVecSource-class.Rd man/MetaInfo-class.Rd man/NIFTIFileDescriptor-class.Rd man/NIFTIMetaInfo-class.Rd man/NamedAxis-class.Rd man/NeuroBucket-class.Rd man/NeuroObj-class.Rd man/NeuroSlice-class.Rd man/NeuroSlice.Rd man/NeuroSpace-class.Rd man/NeuroVec-class.Rd man/NeuroVec-methods.Rd man/NeuroVecSeq-class.Rd man/NeuroVecSeq.Rd man/NeuroVecSource-class.Rd man/NeuroVecSource.Rd man/NeuroVol-class.Rd man/NeuroVol.Rd man/NeuroVolSource-class.Rd man/ROI-class.Rd man/ROIVec-class.Rd man/ROIVec.Rd man/ROIVecWindow-class.Rd man/ROIVol-class.Rd man/ROIVol.Rd man/ROIVolWindow-class.Rd man/SparseNeuroVec-class.Rd man/SparseNeuroVec-methods.Rd man/SparseNeuroVecSource-class.Rd man/SparseNeuroVol-class.Rd man/add_dim-methods.Rd man/as-methods.Rd man/as.dense-methods.Rd man/as.list-methods.Rd man/as.logical-methods.Rd man/as.mask-methods.Rd man/as.matrix-methods.Rd man/as.numeric-methods.Rd man/as.sparse-methods.Rd man/axes-methods.Rd man/bounds-methods.Rd man/centroid-methods.Rd man/close-methods.Rd man/concat-methods.Rd man/conn_comp-methods.Rd man/conn_comp_3D.Rd man/coord_to_grid-methods.Rd man/coord_to_index-methods.Rd man/coords-methods.Rd man/cuboid_roi.Rd man/data_file-methods.Rd man/data_file_matches-methods.Rd man/data_reader-methods.Rd man/deferred_list.Rd man/deferred_list2.Rd man/dim-FileMetaInfo-method.Rd man/dim-NeuroSpace-method.Rd man/dim-methods.Rd man/dim_of-methods.Rd man/drop-methods.Rd man/drop_dim-methods.Rd man/extractor3d.Rd man/extractor4d.Rd man/file_matches-methods.Rd man/grid_to_coord-methods.Rd man/grid_to_grid-methods.Rd man/grid_to_index-methods.Rd man/header_file-methods.Rd man/header_file_matches-methods.Rd man/index_to_coord-methods.Rd man/index_to_grid-methods.Rd man/indices-methods.Rd man/internal-methods.Rd man/inverse_trans-methods.Rd man/length-methods.Rd man/linear_access-methods.Rd man/load_data-methods.Rd man/lookup-methods.Rd man/map-methods.Rd man/map_values-methods.Rd man/matchAnatomy2D.Rd man/matchAnatomy3D.Rd man/ndim-methods.Rd man/neuro_space.Rd man/neuroim2.Rd man/num_clusters-methods.Rd man/origin-methods.Rd man/partition-methods.Rd man/patch_set-methods.Rd man/perm_mat-methods.Rd man/plot-methods.Rd man/print-AxisSet2D-method.Rd man/print-AxisSet3D-method.Rd man/print-NamedAxis-method.Rd man/print-methods.Rd man/random_searchlight.Rd man/read_afni_header.Rd man/read_columns-methods.Rd man/read_elements-methods.Rd man/read_header.Rd man/read_meta_info-methods.Rd man/read_vec.Rd man/read_vol.Rd man/read_vol_list.Rd man/render-methods.Rd man/render_slice-methods.Rd man/reorient-methods.Rd man/scale_series-methods.Rd man/searchlight.Rd man/series-methods.Rd man/show-AxisSet1D-method.Rd man/show-AxisSet2D-method.Rd man/show-AxisSet3D-method.Rd man/show-AxisSet4D-method.Rd man/show-ClusteredNeuroVol-method.Rd man/show-FileMetaInfo-method.Rd man/show-NamedAxis-method.Rd man/show-NeuroSpace-method.Rd man/show-NeuroVec-method.Rd man/show-NeuroVecSource-method.Rd man/show-NeuroVol-method.Rd man/show-ROIVec-method.Rd man/show-ROIVol-method.Rd man/show-SparseNeuroVec-method.Rd man/show-SparseNeuroVol-method.Rd man/slice-methods.Rd man/slices-methods.Rd man/space-methods.Rd man/spacing-methods.Rd man/spherical_roi.Rd man/split_blocks-methods.Rd man/split_clusters-methods.Rd man/split_fill-methods.Rd man/split_reduce-methods.Rd man/split_scale-methods.Rd man/square_roi.Rd man/strip_extension-methods.Rd man/sub-SparseNeuroVec-numeric-numeric-ANY-method.Rd man/sub-SparseNeuroVol-numeric-numeric-ANY-method.Rd man/sub_vector-methods.Rd man/trans-methods.Rd man/values-methods.Rd man/vectors-methods.Rd man/vol_subset-methods.Rd man/vols-methods.Rd man/voxels-methods.Rd man/which_dim-methods.Rd man/write_elements-methods.Rd man/write_vec-methods.Rd man/write_vol-methods.Rd
neuroim2.Rproj
src/RcppExports.cpp
src/indexFuns.cpp
test_data/global_mask.nii
test_data/global_mask_v5.nii
tests/testthat.R tests/testthat/test-conn_comp.R tests/testthat/test-filebacked.R tests/testthat/test-mapped.R tests/testthat/test-neurovec.R tests/testthat/test-neurovol.R tests/testthat/test-roivol.R tests/testthat/test-vecseq.R vignettes/ImageVolumes.Rmd vignettes/NeuroVector.Rmd vignettes/neuroim.Rmd vignettes/pipelines.Rmd vignettes/regionOfInterest.Rmd
bbuchsbaum/neuroim2 documentation built on Sept. 11, 2019, 2:01 p.m.