README.md

In bcm-uga/dmprocrdata: A set of data dedicated to the dmprocr R package

dmprocrdata: a set of data dedicated to the dmprocr R package.

Paul Terzian, Florent Chuffart, Magali Richard

Description

The dmprocrdata package provides a set of data dedicated to the dmprocr R package. It embeds TCGA public LUAD omics data (genome, transcriptome, methylome and associated metadata). See https://cancergenome.nih.gov for details.

Content of the package

Objects available in the package are:

• data_trscr matrix of transcriptomic data.
• data_cnv matrix of genomic data.
• data_meth matrix of methylome data.
• exp_grp dataframe of metadata concerning samples (data_* columns).
• gene_list dataframe of metadata concerning genes (bed formatted, data_trscr and data_cnv rows).
• pf_meth dataframe of metadata concerning methylome probes (data_meth rows).

Installation

To get the current development version from github:

# install.packages("devtools")
devtools::install_github("magrichard/dmprocrdata")

bcm-uga/dmprocrdata documentation built on May 17, 2019, 5:46 p.m.