Files in bcohn12/retina
Support Functions to analyze cell densities

..Rcheck/00check.log
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS.md R/composite.R R/development.md R/matrix_retobj.R R/plotting_functions.R R/polar_plot_from_mat.R R/retina-package.r R/retina_object.R R/retina_samples.R R/retistruct_processing_functions.R R/spin_optimization.R README.md
appveyor.yml
cran-comments.md
inst/.DS_Store
inst/extdata/asalmon_mcw/diagram_retina/150102_OS_BF_55umpp.tif
inst/extdata/asalmon_mcw/diagram_retina/P.csv
inst/extdata/asalmon_mcw/diagram_retina/T.csv
inst/extdata/asalmon_mcw/diagram_retina/datapoints.csv
inst/extdata/asalmon_mcw/diagram_retina/falc.txt
inst/extdata/asalmon_mcw/diagram_retina/ij.xlsx
inst/extdata/asalmon_mcw/diagram_retina/markup.csv
inst/extdata/asalmon_mcw/diagram_retina/outline.roi
inst/extdata/asalmon_mcw/diagram_retina/xyz.csv
inst/extdata/asalmon_mcw/main.r inst/extdata/northern_elephant_seals/NES_count_summary.pdf inst/extdata/northern_elephant_seals/NES_count_summary_MA_11_36.pdf
inst/extdata/tutorial_data/diagram_retina_screenshot.png
inst/extdata/tutorial_data/site_counts_from_stereology.csv
install.md
retina.Rproj
tests/testthat.R tests/testthat/test_add_degrees.R tests/testthat/test_batch.r tests/testthat/test_composite_retina.R tests/testthat/test_density_functions.R tests/testthat/test_fit_diagnostics.R tests/testthat/test_retinal_perimeter_estimation.R
tests/testthat/test_retinas/3hgbqg/diagram_retina/P.csv
tests/testthat/test_retinas/3hgbqg/diagram_retina/T.csv
tests/testthat/test_retinas/3hgbqg/diagram_retina/datapoints.csv
tests/testthat/test_retinas/3hgbqg/diagram_retina/falc.txt
tests/testthat/test_retinas/3hgbqg/diagram_retina/markup.csv
tests/testthat/test_retinas/3hgbqg/diagram_retina/outline.png
tests/testthat/test_retinas/3hgbqg/diagram_retina/outline.roi
tests/testthat/test_retinas/3hgbqg/diagram_retina/xyz.csv
tests/testthat/test_retinas/3hgbqg_direct_csv_coords/diagram_retina/P.csv
tests/testthat/test_retinas/3hgbqg_direct_csv_coords/diagram_retina/T.csv
tests/testthat/test_retinas/3hgbqg_direct_csv_coords/diagram_retina/datapoints.csv
tests/testthat/test_retinas/3hgbqg_direct_csv_coords/diagram_retina/falc.txt
tests/testthat/test_retinas/3hgbqg_direct_csv_coords/diagram_retina/markup.csv
tests/testthat/test_retinas/3hgbqg_direct_csv_coords/diagram_retina/outline.png
tests/testthat/test_retinas/3hgbqg_direct_csv_coords/diagram_retina/outline.roi
tests/testthat/test_retinas/3hgbqg_direct_csv_coords/diagram_retina/xyz.csv
tests/testthat/test_retinas/40oik5/40oik5.PNG
tests/testthat/test_retinas/40oik5/diagram_retina/P.csv
tests/testthat/test_retinas/40oik5/diagram_retina/T.csv
tests/testthat/test_retinas/40oik5/diagram_retina/datapoints.csv
tests/testthat/test_retinas/40oik5/diagram_retina/falc.txt
tests/testthat/test_retinas/40oik5/diagram_retina/markup.csv
tests/testthat/test_retinas/40oik5/diagram_retina/outline.roi
tests/testthat/test_retinas/40oik5/diagram_retina/xyz.csv
tests/testthat/test_retinas/8pm223/8pm223.PNG
tests/testthat/test_retinas/8pm223/README.txt
tests/testthat/test_retinas/8pm223/diagram_retina/P.csv
tests/testthat/test_retinas/8pm223/diagram_retina/T.csv
tests/testthat/test_retinas/8pm223/diagram_retina/datapoints.csv
tests/testthat/test_retinas/8pm223/diagram_retina/falc.txt
tests/testthat/test_retinas/8pm223/diagram_retina/markup.csv
tests/testthat/test_retinas/8pm223/diagram_retina/outline.roi
tests/testthat/test_retinas/8pm223/diagram_retina/xyz.csv
tests/testthat/test_retinas/8pm223_direct_csv_coords/8pm223.PNG
tests/testthat/test_retinas/8pm223_direct_csv_coords/README.txt
tests/testthat/test_retinas/8pm223_direct_csv_coords/diagram_retina/P.csv
tests/testthat/test_retinas/8pm223_direct_csv_coords/diagram_retina/T.csv
tests/testthat/test_retinas/8pm223_direct_csv_coords/diagram_retina/datapoints.csv
tests/testthat/test_retinas/8pm223_direct_csv_coords/diagram_retina/falc.txt
tests/testthat/test_retinas/8pm223_direct_csv_coords/diagram_retina/markup.csv
tests/testthat/test_retinas/8pm223_direct_csv_coords/diagram_retina/outline.roi
tests/testthat/test_retinas/8pm223_direct_csv_coords/diagram_retina/xyz.csv
tests/testthat/test_retinas/bjii4t/bjii4t.png
tests/testthat/test_retinas/bjii4t/bjii4t.xlsx
tests/testthat/test_retinas/bjii4t/diagram_retina/P.csv
tests/testthat/test_retinas/bjii4t/diagram_retina/T.csv
tests/testthat/test_retinas/bjii4t/diagram_retina/datapoints.csv
tests/testthat/test_retinas/bjii4t/diagram_retina/falc.txt
tests/testthat/test_retinas/bjii4t/diagram_retina/markup.csv
tests/testthat/test_retinas/bjii4t/diagram_retina/outline.roi
tests/testthat/test_retinas/bjii4t/diagram_retina/xyz.csv
tests/testthat/test_retinas/gv3igs/README.txt
tests/testthat/test_retinas/gv3igs/diagram_retina/P.csv
tests/testthat/test_retinas/gv3igs/diagram_retina/T.csv
tests/testthat/test_retinas/gv3igs/diagram_retina/datapoints.csv
tests/testthat/test_retinas/gv3igs/diagram_retina/falc.txt
tests/testthat/test_retinas/gv3igs/diagram_retina/markup.csv
tests/testthat/test_retinas/gv3igs/diagram_retina/outline.roi
tests/testthat/test_retinas/gv3igs/diagram_retina/xyz.csv
tests/testthat/test_retinas/gv3igs/gv3igs.png
tests/testthat/test_retinas/jhvbwt/diagram_retina/P.csv
tests/testthat/test_retinas/jhvbwt/diagram_retina/T.csv
tests/testthat/test_retinas/jhvbwt/diagram_retina/datapoints.csv
tests/testthat/test_retinas/jhvbwt/diagram_retina/falc.txt
tests/testthat/test_retinas/jhvbwt/diagram_retina/markup.csv
tests/testthat/test_retinas/jhvbwt/diagram_retina/outline.roi
tests/testthat/test_retinas/jhvbwt/diagram_retina/xyz.csv
tests/testthat/test_retinas/jhvbwt/gv3igs.png
tests/testthat/test_retinas/key.md
tests/testthat/test_retinas/raxp91/diagram_retina/P.csv
tests/testthat/test_retinas/raxp91/diagram_retina/T.csv
tests/testthat/test_retinas/raxp91/diagram_retina/datapoints.csv
tests/testthat/test_retinas/raxp91/diagram_retina/falc.txt
tests/testthat/test_retinas/raxp91/diagram_retina/markup.csv
tests/testthat/test_retinas/raxp91/diagram_retina/outline.roi
tests/testthat/test_retinas/raxp91/diagram_retina/xyz.csv
tests/testthat/test_retinas/raxp91/raxp91.png
tests/testthat/test_smoothing_params.R tests/testthat/test_spin_optimization.R tutorial.md
tutorial_pix/diagram_retina_screenshot.png
tutorial_pix/falc_traced.png
tutorial_pix/finished_tracing.png
tutorial_pix/make_xyz_mapping.png
tutorial_pix/markup_retistruct.png
tutorial_pix/menu_xy_coords.png
tutorial_pix/minx.png
tutorial_pix/newRfile.png
tutorial_pix/polygon_tracing.png
tutorial_pix/retina_plot_output_pmol753.jpg
tutorial_pix/retistruct_gui_open.png
tutorial_pix/roi_select.png
tutorial_pix/save_roi.png
tutorial_pix/select_polygon.png
tutorial_pix/setwd.png
tutorial_pix/site_counts_pic.png
tutorial_pix/source_or_run_line.png
tutorial_pix/xyz_template.png
vignettes/retina-vignette.Rmd
vignettes/retina-vignette.html
bcohn12/retina documentation built on June 8, 2018, 10:20 p.m.