README.md

FindFocals - An R package to detect focal gains and deletions in SNP array data

Description

FindFocals is a simple package to detect small focal gains and deletions in SNP array data. It uses a naive approach to find clusters of SNPs above or below the expected range.

Notes:

Install

The easiest way to install the package is using devtools

library(devtools)
install_github("bernatgel/FindFocals")

How to use it

Load the data with loadSNPData and then process the results with findFocals. The resulting object will contain the raw data and the focal gains and deletions. Two additional functions are available to plot the raw data (plotSNPData) and the complete results (plotFocals).



bernatgel/FindFocals documentation built on May 3, 2019, 9:04 p.m.