Files in bgctw/REddyProc
Post Processing of (Half-)Hourly Eddy-Covariance Measurements
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
.travis.yml
DESCRIPTION
Dockerfile
NAMESPACE
NEWS.md
R/CheckVal.R
R/DataFunctions.R
R/EddyGapfilling.R
R/EddyPartitioning.R
R/EddyPlotting.R
R/EddyUStarFilterChangePointDetection.R
R/EddyUStarFilterDP.R
R/Example.R
R/FileHandling.R
R/FileHandlingFormats.R
R/GeoFunctions.R
R/LRC_base.R
R/LRC_logisticSigmoid.R
R/LRC_nonrectangular.R
R/LRC_rectangular.R
R/PartitioningLasslop10.R
R/PartitioningLasslop10Nighttime.R
R/RcppExports.R
R/aEddy.R
R/estimate_vpd_from_dew.R
R/imports.R
R/logitnorm.R
R/variableNames.R
R/zzzDebugCode.R
README-example-1.png
README.Rmd
README.md
cran-comments.md
data/DEGebExample.RData
data/Example_DETha98.RData
develop/DevelopmentNotes.docx
develop/FlowDiagramGapfilling.pptx
develop/MDSFlow.jpg
develop/OutputColsExample.xlsx
develop/compOldNewTool.R
develop/compareOldTool/EvaluationGLPartitioning.R
develop/compareOldTool/EvaluationGLPartitioning_debug.R
develop/compareOldTool/GLPartitioningTestCase.R
develop/compareOldTool/GlParitioningTestCasePlots.R
develop/compareOldTool/HarvardForestCase.R
develop/compareOldTool/TharandtCase.R
develop/compareOldTool/compare_NRect.R
develop/debug_dump_rda.R
develop/debug_onlineTool.R
develop/dockerCran/Dockerfile
develop/dockerCran/readme.txt
develop/dockerDepends/Dockerfile
develop/dockerSuggests/Dockerfile
develop/genDEGebExample.R
develop/genOldToolData.R
develop/genRpackage.R
develop/partGL_ControlFlow.graphml
develop/partGL_ControlFlow.pdf
develop/profile/profile.R
develop/profile/readme.md
develop/setREnvir.R
develop/templateInlinedocs.R
develop/testEddyProc.R
examples/Example_DE-Tha.1996.1998.hourly_selVars.nc
examples/Example_DETha98.txt
examples/readme.txt
inst/.gitignore
inst/WORDLIST
inst/examples/.gitignore
inst/examples/Example_DE-Tha.1996.1998.hourly_selVars.nc
inst/examples/Example_DETha98.txt
inst/genData/DEGebExample.Rd
inst/genData/Example_DETha98.Rd
inst/genData/LightResponseCurveFitter-class.Rd
inst/genData/LightResponseCurveFitter.Rd
inst/genData/LogisticSigmoidLRCFitter-class.Rd
inst/genData/LogisticSigmoidLRCFitter.Rd
inst/genData/NonrectangularLRCFitter-class.Rd
inst/genData/NonrectangularLRCFitter.Rd
inst/genData/REddyProc-package.Rd
inst/genData/RHLightResponseCostC.Rd
inst/genData/RectangularLRCFitter-class.Rd
inst/genData/RectangularLRCFitter.Rd
inst/genData/RectangularLRCFitterCVersion-class.Rd
inst/genData/RectangularLRCFitterCVersion.Rd
inst/genData/deleteRdList.txt
inst/genData/globalDummyVars.Rd
inst/genData/pipe.Rd
inst/genData/sEddyProc-class.Rd
inst/genData/sEddyProc.Rd
man/BerkeleyJulianDateToPOSIXct.Rd
man/DEGebExample.Rd
man/Example_DETha98.Rd
man/LightResponseCurveFitter-class.Rd
man/LightResponseCurveFitter.Rd
man/LightResponseCurveFitter_computeCost.Rd
man/LightResponseCurveFitter_computeLRCGradient.Rd
man/LightResponseCurveFitter_fitLRC.Rd
man/LightResponseCurveFitter_getOptimizedParameterPositions.Rd
man/LightResponseCurveFitter_getParameterInitials.Rd
man/LightResponseCurveFitter_getParameterNames.Rd
man/LightResponseCurveFitter_getPriorLocation.Rd
man/LightResponseCurveFitter_getPriorScale.Rd
man/LightResponseCurveFitter_isParameterInBounds.Rd
man/LightResponseCurveFitter_optimLRC.Rd
man/LightResponseCurveFitter_optimLRCBounds.Rd
man/LightResponseCurveFitter_optimLRCOnAdjustedPrior.Rd
man/LightResponseCurveFitter_predictGPP.Rd
man/LightResponseCurveFitter_predictLRC.Rd
man/LogisticSigmoidLRCFitter-class.Rd
man/LogisticSigmoidLRCFitter.Rd
man/LogisticSigmoidLRCFitter_predictGPP.Rd
man/NonrectangularLRCFitter-class.Rd
man/NonrectangularLRCFitter.Rd
man/NonrectangularLRCFitter_getParameterNames.Rd
man/NonrectangularLRCFitter_predictGPP.Rd
man/POSIXctToBerkeleyJulianDate.Rd
man/REddyProc-package.Rd
man/REddyProc_defaultunits.Rd
man/RHLightResponseCostC.Rd
man/RectangularLRCFitter-class.Rd
man/RectangularLRCFitter.Rd
man/RectangularLRCFitterCVersion-class.Rd
man/RectangularLRCFitterCVersion.Rd
man/RectangularLRCFitter_predictGPP.Rd
man/estimate_vpd_from_dew.Rd
man/extract_FN15.Rd
man/fCalcAVPfromVMFandPress.Rd
man/fCalcETfromLE.Rd
man/fCalcExtRadiation.Rd
man/fCalcPotRadiation.Rd
man/fCalcRHfromAVPandTair.Rd
man/fCalcSVPfromTair.Rd
man/fCalcVPDfromRHandTair.Rd
man/fCheckHHTimeSeries.Rd
man/fConvertCtoK.Rd
man/fConvertGlobalToVisible.Rd
man/fConvertKtoC.Rd
man/fConvertTimeToPosix.Rd
man/fConvertVisibleWm2toPhotons.Rd
man/fKeepColumnAttributes.Rd
man/fLloydTaylor.Rd
man/fLoadAmeriflux22.Rd
man/fLoadEuroFlux16.Rd
man/fLoadFluxnet15.Rd
man/fLoadTXTIntoDataframe.Rd
man/fSplitDateTime.Rd
man/fWriteDataframeToFile.Rd
man/fWriteFrench23.Rd
man/filterLongRuns.Rd
man/filterLongRunsInVector.Rd
man/filter_entire_days.Rd
man/filter_years_eop.Rd
man/getAmerifluxToBGC05VariableNameMapping.Rd
man/getBGC05ToAmerifluxVariableNameMapping.Rd
man/getExamplePath.Rd
man/getFilledExampleDETha98Data.Rd
man/getREddyProcExampleDir.Rd
man/getTZone.Rd
man/get_day_boundaries.Rd
man/get_timestep_hours.Rd
man/globalDummyVars.Rd
man/help_DateTimes.Rd
man/help_export.Rd
man/partGLControl.Rd
man/partGLControlLasslopCompatible.Rd
man/partGLExtractStandardData.Rd
man/partitionNEEGL.Rd
man/pipe.Rd
man/read_from_ameriflux22.Rd
man/read_from_fluxnet15.Rd
man/renameVariablesInDataframe.Rd
man/sEddyProc-class.Rd
man/sEddyProc.Rd
man/sEddyProc_initialize.Rd
man/sEddyProc_sApplyUStarScen.Rd
man/sEddyProc_sCalcPotRadiation.Rd
man/sEddyProc_sEstUstarThold.Rd
man/sEddyProc_sEstUstarThreshold.Rd
man/sEddyProc_sEstUstarThresholdDistribution.Rd
man/sEddyProc_sEstimateUstarScenarios.Rd
man/sEddyProc_sExportData.Rd
man/sEddyProc_sExportResults.Rd
man/sEddyProc_sFillInit.Rd
man/sEddyProc_sFillLUT.Rd
man/sEddyProc_sFillMDC.Rd
man/sEddyProc_sFillVPDFromDew.Rd
man/sEddyProc_sGLFluxPartition.Rd
man/sEddyProc_sGLFluxPartitionUStarScens.Rd
man/sEddyProc_sGetData.Rd
man/sEddyProc_sGetEstimatedUstarThresholdDistribution.Rd
man/sEddyProc_sGetUstarScenarios.Rd
man/sEddyProc_sGetUstarSuffixes.Rd
man/sEddyProc_sMDSGapFill.Rd
man/sEddyProc_sMDSGapFillAfterUStarDistr.Rd
man/sEddyProc_sMDSGapFillAfterUstar.Rd
man/sEddyProc_sMDSGapFillUStarScens.Rd
man/sEddyProc_sMRFluxPartition.Rd
man/sEddyProc_sMRFluxPartitionUStarScens.Rd
man/sEddyProc_sPlotDailySums.Rd
man/sEddyProc_sPlotDailySumsY.Rd
man/sEddyProc_sPlotDiurnalCycle.Rd
man/sEddyProc_sPlotDiurnalCycleM.Rd
man/sEddyProc_sPlotFingerprint.Rd
man/sEddyProc_sPlotFingerprintY.Rd
man/sEddyProc_sPlotHHFluxes.Rd
man/sEddyProc_sPlotHHFluxesY.Rd
man/sEddyProc_sPlotNEEVersusUStarForSeason.Rd
man/sEddyProc_sSetLocationInfo.Rd
man/sEddyProc_sSetUStarSeasons.Rd
man/sEddyProc_sSetUstarScenarios.Rd
man/sEddyProc_sTKFluxPartition.Rd
man/sEddyProc_sTKFluxPartitionUStarScens.Rd
man/sEddyProc_update_ustarthreshold_columns.Rd
man/sEddyProc_useAnnualUStarThresholds.Rd
man/sEddyProc_useSeaonsalUStarThresholds.Rd
man/usControlUstarEst.Rd
man/usControlUstarSubsetting.Rd
man/usCreateSeasonFactorMonth.Rd
man/usCreateSeasonFactorMonthWithinYear.Rd
man/usCreateSeasonFactorYday.Rd
man/usCreateSeasonFactorYdayYear.Rd
man/usEstUstarThreshold.Rd
man/usEstUstarThresholdSingleFw1Binned.Rd
man/usEstUstarThresholdSingleFw2Binned.Rd
man/usGetAnnualSeasonUStarMap.Rd
man/usGetSeasonalSeasonUStarMap.Rd
man/usGetYearOfSeason.Rd
revdep/.gitignore
revdep/email.yml
src/RHLightResponseCostC.cpp
src/RcppExports.cpp
src/whichValueGreaterEqualC.cpp
tests/doRUnit.R
tests/testthat/.gitignore
tests/testthat/test_FileHandlingFormats.R
tests/testthat/test_LightResponseCurveFitter.R
tests/testthat/test_UStarFilter.R
tests/testthat/test_binWithEqualValues.R
tests/testthat/test_checkval.R
tests/testthat/test_estimate_vpd_from_dew.R
tests/testthat/test_fCheckValue.R
tests/testthat/test_fConvertTimeToPosix.R
tests/testthat/test_gapfilling.R
tests/testthat/test_geoFunctions.R
tests/testthat/test_getExamplePath.R
tests/testthat/test_partGL.R
tests/testthat/test_plotFingerprint.R
tests/testthat/test_sEddyProc.R
tests/testthat/test_sEddyProc_Partitioning.R
tests/testthat/test_uStarProc.R
vignettes/DEGebExample.Rmd
vignettes/DEGebExample.md
vignettes/DEGebExample_files/figure-html/DEGeb_estUStar1a-1.png
vignettes/DEGebExample_files/figure-markdown_strict/DEGeb_estUStar1a-1.png
vignettes/aggUncertainty.Rmd
vignettes/aggUncertainty.md
vignettes/aggUncertainty_files/figure-markdown_strict/uncBand-1.png
vignettes/aggUncertainty_files/figure-markdown_strict/unnamed-chunk-3-1.png
vignettes/aggUncertainty_files/figure-markdown_strict/unnamed-chunk-6-1.png
vignettes/aggUncertainty_files/figure-markdown_strict/unnamed-chunk-7-1.png
vignettes/bigleaf.Rmd
vignettes/bigleaf.md
vignettes/figure/DEGeb_estUStar1a-1.png
vignettes/gapFilling.Rmd
vignettes/gapFilling.md
vignettes/uStarCases.Rmd
vignettes/uStarCases.md
vignettes/useCase.Rmd
vignettes/useCase.md
vignettes/useCase_files/figure-html/fingerPrintGPP-1.png
vignettes/useCase_files/figure-html/fpNEEFilled-1.png
vignettes/useCase_files/figure-html/fpNEEOrig-1.png
