API for bhklab/PharmacoGx
Analysis of Large-Scale Pharmacogenomic Data

Global functions
.PharmacoSet Man page
CCLEsmall Man page
CMAPsmall Man page
GDSCsmall Man page
GR Source code
GRRegression Source code
GetSupportVec Source code
HDAC_genes Man page
Hill Source code
PharmacoSet Man page Source code
PharmacoSet-class Man page
PharmacoSig Source code
[,PharmacoSet-method Man page
amcc Man page Source code
availablePSets Man page Source code
calculateFromRaw Source code
calculateSensitivitiesStar Source code
callingWaterfall Source code
cellInfo Man page
cellInfo,PharmacoSet-method Man page
cellInfo<- Man page
cellInfo<-,PharmacoSet,data.frame-method Man page
cellNames Man page
cellNames,PharmacoSet-method Man page
cellNames<- Man page
cellNames<-,PharmacoSet,character-method Man page
checkPSetStructure Man page Source code
combineTest Source code
computeABC Man page Source code
computeAUC Man page Source code
computeAUCUnderFittedCurve Source code
computeAUC_old Source code
computeAmax Man page Source code
computeCumSumDelta Source code
computeDSS Source code
computeDelta Source code
computeIC50 Man page Source code
computeICn Man page Source code
computeSlope Man page Source code
connectivityScore Man page Source code
corWeighted Source code
cosinePerm Man page Source code
createPSetEntry Source code
dateCreated Man page
dateCreated,PharmacoSet-method Man page
dim,PharmacoSet-method Man page
distancePointLine Source code
distancePointSegment Source code
dmedncauchys Source code
dmednnormals Source code
downloadPSet Man page Source code
downloadPertSig Man page Source code
drugDoseResponseCurve Man page Source code
drugInfo Man page
drugInfo,PharmacoSet-method Man page
drugInfo<- Man page
drugInfo<-,PharmacoSet,data.frame-method Man page
drugNames Man page
drugNames,PharmacoSet-method Man page
drugNames<- Man page
drugNames<-,PharmacoSet,character-method Man page
drugPerturbationSig Man page Source code
drugSensitivitySig Man page Source code
edmedncauchys Source code
edmednnormals Source code
fNames Man page
fNames,PharmacoSet-method Man page
featureInfo Man page
featureInfo,PharmacoSet-method Man page
featureInfo<- Man page
featureInfo<-,PharmacoSet,character,data.frame-method Man page
filterNoisyCurves Man page Source code
geneDrugPerturbation Source code
geneDrugSensitivity Source code
getCommonConcentrationRange Source code
getRawSensitivityMatrix Source code
gwc Man page Source code
intersectList Man page Source code
intersectPSet Man page Source code
logLogisticRegression Man page Source code
mDataNames Man page Source code
mcc Man page Source code Source code
meshEval Source code
molecularProfiles Man page
molecularProfiles,PharmacoSet-method Man page
molecularProfiles<- Man page
molecularProfiles<-,PharmacoSet,character,matrix-method Man page
multinom Source code Source code
optimizeRegression Source code
pSetName Man page
pSetName,PharmacoSet-method Man page
pertNumber Man page
pertNumber,PharmacoSet-method Man page
pertNumber<- Man page
pertNumber<-,PharmacoSet,array-method Man page
phenoInfo Man page
phenoInfo,PharmacoSet-method Man page
phenoInfo<- Man page
phenoInfo<-,PharmacoSet,character,data.frame-method Man page
pmedncauchys Source code
pmednnormals Source code
rankGeneDrugPerturbation Source code
rankGeneDrugSensitivity Source code
residual Source code
rmedncauchys Source code
rmednnormals Source code
sanitizeInput Source code
sensNumber Man page
sensNumber,PharmacoSet-method Man page
sensNumber<- Man page
sensNumber<-,PharmacoSet,matrix-method Man page
sensitivityInfo Man page
sensitivityInfo,PharmacoSet-method Man page
sensitivityInfo<- Man page
sensitivityInfo<-,PharmacoSet,data.frame-method Man page
sensitivityMeasures Man page
sensitivityMeasures,PharmacoSet-method Man page
sensitivityProfiles Man page
sensitivityProfiles,PharmacoSet-method Man page
sensitivityProfiles<- Man page
sensitivityProfiles<-,PharmacoSet,data.frame-method Man page
sensitivityProfiles<-,PharmacoSet,matrix-method Man page
show,PharmacoSet-method Man page
show,PharmacoSig-method Man page
showSigAnnot Man page Source code
stripWhiteSpace Source code
subsetTo Man page Source code
summarizeMolecularNumbers Source code
summarizeMolecularProfiles Man page Source code
summarizePerturbationNumbers Source code
summarizeSensitivityNumbers Source code
summarizeSensitivityProfiles Man page Source code
symSetDiffList Man page Source code
unionList Man page Source code
updateCellId Source code
updateDrugId Source code
updateMaxConc Source code
bhklab/PharmacoGx documentation built on Dec. 10, 2017, 11:21 p.m.