getSheetOrder: Get order of workbook sheets for final excel file

Description Usage Arguments

View source: R/halo.R

Description

Order sheets according to whether fractions and/or medians are to be run

Usage

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getSheetOrder(runCounts = TRUE, runMedians = TRUE, runFracTotal = FALSE,
  altBases = NULL, debug = FALSE)

Arguments

runCounts

include raw counts in final output; DEFAULT=TRUE

runMedians

include a sheet of medians for each counts and fraction sheet; DEFAULT=TRUE

runFracTotal

include a sheet of fractions of total cells; DEFAULT=FALSE

altBases

include a sheet of fractions of cells positive for each of these markers; DEFAULT=NULL

debug

print debug messages; DEFAULT=FALSE


bic-mskcc/halo documentation built on Jan. 27, 2018, 12:19 a.m.