In bioinfocz/scdrake: A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like toolkit for R language
Filter cells based on custom (fixed) thresholds of QC metrics:
- <Min; Max> UMI per cell: <
r cfg$MIN_UMI_CF; r as.character(cfg$MAX_UMI_CF)>
- Min. number of features (genes) detected:
r cfg$MIN_FEATURES
- Max. ratio of mitochondrial genes expression:
r cfg$MAX_MITO_RATIO
r get_used_qc_filters_operator_desc(cfg$CUSTOM_FILTERS_OPERATOR)
Removing r sum(custom_filter) low quality cells based on custom thresholds.
bioinfocz/scdrake documentation built on Sept. 19, 2024, 4:43 p.m.
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Filter cells based on custom (fixed) thresholds of QC metrics:
- <Min; Max> UMI per cell: <
r cfg$MIN_UMI_CF;r as.character(cfg$MAX_UMI_CF)> - Min. number of features (genes) detected:
r cfg$MIN_FEATURES - Max. ratio of mitochondrial genes expression:
r cfg$MAX_MITO_RATIO
r get_used_qc_filters_operator_desc(cfg$CUSTOM_FILTERS_OPERATOR)
Removing r sum(custom_filter) low quality cells based on custom thresholds.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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