tests/testthat/_snaps/config.md

In bioinfocz/scdrake: A pipeline for droplet-based single-cell RNA-seq data secondary analysis implemented in the drake Make-like toolkit for R language

local YAML configs are created and updated

Code
  list.files(recursive = TRUE)
Output
   [1] "config/integration/00_main.default.yaml"             
   [2] "config/integration/00_main.yaml"                     
   [3] "config/integration/01_integration.default.yaml"      
   [4] "config/integration/01_integration.yaml"              
   [5] "config/integration/02_int_clustering.default.yaml"   
   [6] "config/integration/02_int_clustering.yaml"           
   [7] "config/integration/cluster_markers.default.yaml"     
   [8] "config/integration/cluster_markers.yaml"             
   [9] "config/integration/contrasts.default.yaml"           
  [10] "config/integration/contrasts.yaml"                   
  [11] "config/pipeline.default.yaml"                        
  [12] "config/pipeline.yaml"                                
  [13] "config/single_sample/00_main.default.yaml"           
  [14] "config/single_sample/00_main.yaml"                   
  [15] "config/single_sample/01_input_qc.default.yaml"       
  [16] "config/single_sample/01_input_qc.yaml"               
  [17] "config/single_sample/02_norm_clustering.default.yaml"
  [18] "config/single_sample/02_norm_clustering.yaml"        
  [19] "config/single_sample/cluster_markers.default.yaml"   
  [20] "config/single_sample/cluster_markers.yaml"           
  [21] "config/single_sample/contrasts.default.yaml"         
  [22] "config/single_sample/contrasts.yaml"

Code
  list.files(recursive = TRUE)
Output
   [1] "config/integration/00_main.default.yaml"             
   [2] "config/integration/00_main.yaml"                     
   [3] "config/integration/00_main.yaml.backup"              
   [4] "config/integration/01_integration.default.yaml"      
   [5] "config/integration/01_integration.yaml"              
   [6] "config/integration/01_integration.yaml.backup"       
   [7] "config/integration/02_int_clustering.default.yaml"   
   [8] "config/integration/02_int_clustering.yaml"           
   [9] "config/integration/02_int_clustering.yaml.backup"    
  [10] "config/integration/cluster_markers.default.yaml"     
  [11] "config/integration/cluster_markers.yaml"             
  [12] "config/integration/cluster_markers.yaml.backup"      
  [13] "config/integration/contrasts.default.yaml"           
  [14] "config/integration/contrasts.yaml"                   
  [15] "config/integration/contrasts.yaml.backup"            
  [16] "config/pipeline.default.yaml"                        
  [17] "config/pipeline.yaml"                                
  [18] "config/pipeline.yaml.backup"                         
  [19] "config/single_sample/00_main.default.yaml"           
  [20] "config/single_sample/00_main.yaml"                   
  [21] "config/single_sample/00_main.yaml.backup"            
  [22] "config/single_sample/01_input_qc.default.yaml"       
  [23] "config/single_sample/01_input_qc.yaml"               
  [24] "config/single_sample/01_input_qc.yaml.backup"        
  [25] "config/single_sample/02_norm_clustering.default.yaml"
  [26] "config/single_sample/02_norm_clustering.yaml"        
  [27] "config/single_sample/02_norm_clustering.yaml.backup" 
  [28] "config/single_sample/cluster_markers.default.yaml"   
  [29] "config/single_sample/cluster_markers.yaml"           
  [30] "config/single_sample/cluster_markers.yaml.backup"    
  [31] "config/single_sample/contrasts.default.yaml"         
  [32] "config/single_sample/contrasts.yaml"                 
  [33] "config/single_sample/contrasts.yaml.backup"

parameters in a YAML file starting with '!code ' are evaluated

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Ul8xAAQACQAAAAVWQVJfMgAEAAkAAAAFVkFSXzMABAAJAAAABVZBUl80AAQACQAAAAVWQVJf
NQAABAIAAAABAAQACQAAAAVjbGFzcwAAABAAAAACAAQACQAAAAxzY2RyYWtlX2xpc3QABAAJ
AAAABGxpc3QAAAD+

WAoAAAACAAQBAAACAwAAAAMTAAAAAQAAABAAAAABAAQACQAAAApBUFBMRSBUUkVFAAAEAgAA
AAEABAAJAAAABW5hbWVzAAAAEAAAAAEABAAJAAAABVZBUl82AAAEAgAAAAEABAAJAAAABWNs
YXNzAAAAEAAAAAIABAAJAAAADHNjZHJha2VfbGlzdAAEAAkAAAAEbGlzdAAAAP4=

bioinfocz/scdrake documentation built on Sept. 19, 2024, 4:43 p.m.