Ensemble Platform for Species Distribution Modeling

BinaryTransformation-methods | Convert species' probability of occurrence into binary... |

biomod2.inner-methods | biomod2 internal functions |

biomod2_model-class | biomod2 models objects class and functions |

biomod2-package | Species Distribution Modeling within an Ensemble Forecasting... |

BIOMOD_ConvertOldRun | Convert objects and outputs from BIOMOD.xx into biomod2.xx... |

BIOMOD_cv | Custom models cross-validation procedure |

BIOMOD_EnsembleForecasting | Ensemble projections of species over space and time |

BIOMOD_EnsembleModeling | Create and evaluate an ensemble set of models and predictions |

BIOMOD.EnsembleModeling.out-methods | BIOMOD.EnsembleModeling.out getters |

BIOMOD.EnsembleModeling.out-objects | BIOMOD_EnsembleModeling() outputs objects class |

BIOMOD.formated.data-class | BIOMOD_FormatingData() outputs objects class |

BIOMOD_FormatingData | Initialize the datasets for usage in 'biomod2' |

BIOMOD_LoadModels | Load models built within BIOMOD_Modeling function |

BIOMOD_Modeling | Run a range of species distribution models |

BIOMOD_ModelingOptions | Configure the modeling options for each selected model |

BIOMOD.Model.Options-objects | BIOMOD_ModelingOptions outputs objects class |

BIOMOD.models.out-class | BIOMOD_modelling() outputs objects class |

BIOMOD.models.out-methods | BIOMOD.models.out getters |

BIOMOD_presenceonly | evaluate models with presences only metrics |

BIOMOD_Projection | Project the calibrated models within 'biomod2' into new space... |

BIOMOD.projection.out-class | BIOMOD_Projection() outputs objects class |

BIOMOD.projection.out-methods | BIOMOD.projection.out getters |

BIOMOD_RangeSize | Analysis of the range size changes |

BIOMOD.stored.objects-class | BIOMOD.stored.xxx objects class |

BIOMOD.stored.objects-methods | BIOMOD.stored.objects functions |

BIOMOD_tuning | Tune models parameters |

calculate.stat | Calculate evaluation metrics based on a misclassification... |

CustomIndexMaker | Replace default package Index help file by a custom one. |

deprecated_functions | biomod2 deprecated functions |

DF_to_ARRAY | Convert a biomod2 data.frame (or list) into array |

dot-transform.outputs.array | Reshape biomod2 objects |

dot-transform.outputs.list | Reshape biomod2 objects |

evaluate | biomod2 modelling outputs evaluation |

FilteringTransformation | Convert species' probability of occurrence into binary... |

Find.Optim.Stat | Calculate the best score according to a given evaluation... |

full_shuffling | data set shuffling tool |

getStatOptimValue | get the optimal score of evaluation statistical metrics |

level.plot | Plot 2-dimensional data for visualizing distribution of... |

makeFormula | Standardized formula maker |

models_scores_graph | Produce models evaluation bi-dimensional graph |

multiple.plot | Plot and compare prediction maps within BIOMOD |

Print_Default_ModelingOptions | Get default values of BIOMOD inner models' options |

ProbDensFunc | Probability Density Function |

randomise_data | data set shuffling tool |

RemoveProperly-methods | remove properly BIOMOD_Modeling outputs |

response.plot | Analysis of the response curves of a model within Biomod |

response.plot2 | Function for for plotting predicted responses from species... |

sample.factor.levels | Tool to ensure the sampling of all levels of a factorial... |

SampleMat2 | Sample binary vector |

sre | Surface Range Envelope |

update_objects | update biomod2 objects |

variables_importance | Variables importance calculation |

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