str2dna: Strings to DNAbin
In blex-max/ectosearchR: Simple Wrapper Package around DBI for SQL Querying Van Der Linde 2018 Ectomycorrhizal Dataset
Description
Usage
Arguments
Value
Examples
View source: R/DBI_wrapper_funcs.R
Description
Convert a string or vector of strings to an ape DNAbin object.
Usage
1
str2dna(dna_strings)
Arguments
dna_strings
a string or vector of strings corresponding to a DNA sequence in standard IUPAC notation.
Value
a DNAbin object containing the sequences, per the package ape
Examples
1
2
3
french_seq_data <- ecto_query('SELECT sample_ID, sample_seq FROM seq_data WHERE ICP_country_code = 1;');
seqs <- str2dna(french_seq_data[,2])
names(seqs) <- french_seq_data[,1]
blex-max/ectosearchR documentation built on Dec. 19, 2021, 10:41 a.m.
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Description Usage Arguments Value Examples
View source: R/DBI_wrapper_funcs.R
Description
Convert a string or vector of strings to an ape DNAbin object.
Usage
1 | str2dna(dna_strings)
|
Arguments
dna_strings |
a string or vector of strings corresponding to a DNA sequence in standard IUPAC notation. |
Value
a DNAbin object containing the sequences, per the package ape
Examples
1 2 3 | french_seq_data <- ecto_query('SELECT sample_ID, sample_seq FROM seq_data WHERE ICP_country_code = 1;');
seqs <- str2dna(french_seq_data[,2])
names(seqs) <- french_seq_data[,1]
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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