Description Usage Arguments Value

Computes the maximum likelihood estimate of the transition rates for a binary character

1 | ```
find.mle.mk2(pars, x, phy, hessian = FALSE)
``` |

`pars` |
A vector of initial transition rates. e.g. |

`x` |
A vector of character states in the set 0, 1 |

`phy` |
A phylogeny that inherits class |

`hessian` |
If true the Hessian will be numerically computed. |

A list of results from `subplex`

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