Files in bmcclintock/momentuHMM
Maximum Likelihood Analysis of Animal Movement Behavior Using Multivariate Hidden Markov Models

.Rbuildignore
.travis.yml
DESCRIPTION
NAMESPACE
NEWS
R/AIC_momentuHMM.R R/AICweights.R R/CIbeta.R R/CIreal.R R/HMMfits.R R/MIfitHMM.R R/MIpool.R R/RcppExports.R R/allProbs.R R/checkInputs.R R/checkPar0.R R/circAngles.R R/crawlMerge.R R/crawlWrap.R R/crwData.R R/crwSim.R R/distAngle.R R/exGen.R R/fitHMM.R R/getCovNames.R R/getDM.R R/getPar.R R/getPar0.R R/getParDM.R R/getSplineDM.R R/getWorkBounds.R R/getXB.R R/getboundInd.R R/is_formula.R R/logAlpha.R R/logBeta.R R/miHMM.R R/miSum.R R/momentuHMM.R R/momentuHMMData.R R/momentuHMM_utils.R R/moveData.R R/moveHMMwrap.R R/n2w.R R/nLogLike.R R/parDef.R R/plotPR.R R/plotSat.R R/plotSpatialCov.R R/plotStates.R R/plotStationary.R R/plot_crwData.R R/plot_miHMM.R R/plot_miSum.R R/plot_momentuHMM.R R/plot_momentuHMMData.R R/prepData.R R/print_miHMM.R R/print_miSum.R R/print_momentuHMM.R R/pseudoRes.R R/rwrpcauchy.R R/setModelName.R R/setStateNames.R R/simData.R R/simObsData.R R/stateFormulas.R R/stateProbs.R R/stationary.R R/summary_momentuHMMData.R R/timeInStates.R R/turnAngle.R R/viterbi.R R/w2n.R README.md
data/example.RData
inst/CITATION
man/AIC.momentuHMM.Rd man/AICweights.Rd man/CIbeta.Rd man/CIreal.Rd man/HMMfits.Rd man/MIfitHMM.Rd man/MIpool.Rd man/XBloop_rcpp.Rd man/allProbs.Rd man/checkPar0.Rd man/circAngles.Rd man/crawlMerge.Rd man/crawlWrap.Rd man/crwData.Rd man/crwSim.Rd man/dbern_rcpp.Rd man/dbeta_rcpp.Rd man/dexp_rcpp.Rd man/dgamma_rcpp.Rd man/distAngle.Rd man/dlnorm_rcpp.Rd man/dnorm_rcpp.Rd man/dpois_rcpp.Rd man/dvm_rcpp.Rd man/dweibull_rcpp.Rd man/dwrpcauchy_rcpp.Rd man/exGen.Rd man/example.Rd man/fitHMM.Rd man/getCovNames.Rd man/getDM_rcpp.Rd man/getPar.Rd man/getPar0.Rd man/getParDM.Rd man/is.HMMfits.Rd man/is.crwData.Rd man/is.crwSim.Rd man/is.miHMM.Rd man/is.miSum.Rd man/is.momentuHMM.Rd man/is.momentuHMMData.Rd man/logAlpha.Rd man/logBeta.Rd man/miHMM.Rd man/miSum.Rd man/momentuHMM.Rd man/momentuHMMData.Rd man/n2w.Rd man/nLogLike.Rd man/nLogLike_rcpp.Rd man/parDef.Rd man/plot.crwData.Rd man/plot.miHMM.Rd man/plot.miSum.Rd man/plot.momentuHMM.Rd man/plot.momentuHMMData.Rd man/plotPR.Rd man/plotSat.Rd man/plotSpatialCov.Rd man/plotStates.Rd man/plotStationary.Rd man/prepData.Rd man/print.miHMM.Rd man/print.miSum.Rd man/print.momentuHMM.Rd man/pseudoRes.Rd man/setModelName.Rd man/setStateNames.Rd man/simData.Rd man/simObsData.Rd man/stateProbs.Rd man/stationary.Rd man/summary.momentuHMMData.Rd man/timeInStates.Rd man/trMatrix_rcpp.Rd man/turnAngle.Rd man/viterbi.Rd man/w2n.Rd
manuscript/adjcalc.sty
manuscript/adjustbox.sty
manuscript/coastUTM.RData
manuscript/elephantExample.R
manuscript/elephant_plotSat.png
manuscript/greySealData_TPM.RData
manuscript/greySealExample_TPM.R manuscript/harbourSealExample.R
manuscript/master.bib
manuscript/mee.bst
manuscript/momentuHMM_manuscript.Rnw
manuscript/momentuHMM_manuscript.tex
manuscript/momentuHMM_manuscript_MEE.Rnw
manuscript/momentuHMM_manuscript_MEE.tex
manuscript/momentuHMM_manuscript_MEE_final.Rnw
manuscript/momentuHMM_manuscript_MEE_rev1.Rnw
manuscript/nfsData.RData
manuscript/nfsExample.R manuscript/plot_elephantResults001.pdf manuscript/plot_elephantResults002.pdf manuscript/plot_elephantResults009.pdf manuscript/plot_elephantResults010.pdf manuscript/plot_elephantResults012.pdf manuscript/plot_elephantResults013.pdf manuscript/plot_elephantResults015.pdf manuscript/plot_elephantResults016.pdf manuscript/plot_elephantResults017.pdf
manuscript/plot_greySealResults1.png
manuscript/plot_greySealResults2.png
manuscript/plot_nfsResults.pdf manuscript/plot_turtleResults001.pdf manuscript/plot_turtleResults002.pdf manuscript/plot_turtleResults004.pdf manuscript/plot_turtleResults2.pdf
manuscript/sesData.csv
manuscript/sesExample.R
manuscript/turtleData.RData
manuscript/turtleExample.R manuscript/vignette_examples.R
manuscript/vignette_inputs.RData
manuscript/workflow.pdf
manuscript/workflow.pptx
manuscript/workflow_simData.pdf
manuscript/workflow_simData.pptx
manuscript/workflow_simData_rev1.pdf
manuscript/workflow_simData_rev1.pptx
src/.DS_Store
src/Makevars
src/RcppExports.cpp
src/XBloop.cpp
src/densities.h
src/getDM.cpp
src/momentuHMM_init.c
src/nLogLike.cpp
src/trMatrix.cpp
tests/testthat.R tests/testthat/extraExamples.R
tests/testthat/extraExamples.RData
tests/testthat/test_CIbeta.R tests/testthat/test_CIreal.R tests/testthat/test_MIfitHMM.R tests/testthat/test_allProbs.R tests/testthat/test_crawlWrap.R tests/testthat/test_densities.R tests/testthat/test_examples.R tests/testthat/test_extraExamples.R tests/testthat/test_fitHMM.R tests/testthat/test_getDM.R tests/testthat/test_logAlpha.R tests/testthat/test_momentuHMM.R tests/testthat/test_momentuHMMData.R tests/testthat/test_moveData.R tests/testthat/test_n2w.R tests/testthat/test_nLogLike.R tests/testthat/test_parDef.R tests/testthat/test_plotSat.R tests/testthat/test_plot_momentuHMM.R tests/testthat/test_plot_momentuHMMData.R tests/testthat/test_prepData.R tests/testthat/test_simData.R tests/testthat/test_stateProbs.R tests/testthat/test_trMatrix_rcpp.R tests/testthat/test_turnAngle.R tests/testthat/test_viterbi.R tests/testthat/test_w2n.R
vignettes/adjcalc.sty
vignettes/adjustbox.sty
vignettes/coastUTM.RData
vignettes/elephantExample.R
vignettes/elephant_plotSat.png
vignettes/greySealData_TPM.RData
vignettes/greySealExample_TPM.R vignettes/groupExample.R vignettes/harbourSealExample.R
vignettes/master.bib
vignettes/mee.bst
vignettes/momentuHMM.Rnw
vignettes/momentuHMM.tex
vignettes/nfsData.RData
vignettes/nfsExample.R vignettes/northernFulmarExample.R vignettes/plot_elephantResults001.pdf vignettes/plot_elephantResults002.pdf vignettes/plot_elephantResults009.pdf vignettes/plot_elephantResults010.pdf vignettes/plot_elephantResults012.pdf vignettes/plot_elephantResults013.pdf vignettes/plot_elephantResults015.pdf vignettes/plot_elephantResults016.pdf vignettes/plot_elephantResults017.pdf vignettes/plot_greySealResults002.pdf vignettes/plot_greySealResults006.pdf vignettes/plot_greySealResults009.pdf vignettes/plot_greySealResults013.pdf
vignettes/plot_greySealResults1.png
vignettes/plot_greySealResults2.png
vignettes/plot_groupExample001.pdf vignettes/plot_groupExampleCentroid001.pdf vignettes/plot_groupExampleResults007.pdf vignettes/plot_groupExampleResults008.pdf
vignettes/plot_harbourSeal.png
vignettes/plot_harbourSealResults020.pdf vignettes/plot_nfsResults.pdf
vignettes/plot_northernFulmarExample.png
vignettes/plot_sesResults001.pdf vignettes/plot_sesResults003.pdf vignettes/plot_sesResults007.pdf vignettes/plot_sesResults009.pdf
vignettes/plot_sesResults2.png
vignettes/plot_turtleResults001.pdf vignettes/plot_turtleResults002.pdf vignettes/plot_turtleResults004.pdf vignettes/plot_turtleResults2.pdf
vignettes/sesData.csv
vignettes/sesExample.R
vignettes/trimclip.sty
vignettes/turtleData.RData
vignettes/turtleExample.R vignettes/vignette_examples.R
vignettes/vignette_inputs.RData
bmcclintock/momentuHMM documentation built on June 23, 2018, 6:35 a.m.