knitr::opts_chunk$set( collapse = TRUE, comment = "#>", fig.path = "README-" )
TcGSA is a package which performs Time-course Gene Set Analysis from microarray data, and provide nice representations of its results.
On top of the CRAN help pdf-file, the following article explains what TcGSA is about:
Hejblum, B. P., Skinner, J., & Thiébaut, R. (2015). Time-Course Gene Set Analysis for Longitudinal Gene Expression Data. PLOS Comput Biol, 11(6), e1004310. DOI:10.1371/journal.pcbi.1004310
TcGSA imports the
multtest package which is not available on CRAN, but is available on the Bioconductor repository.
Before installing TcGSA, be sure to have this
multtest package installed. If not, you can do so by running the following:
The easiest way to get
TcGSA is to install it from CRAN:
or to get the development version from GitHub:
-- Boris Hejblum
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