tests/testthat/test_locuscompare.R
In boxiangliu/locuscomparer: locuscomparer: Visualization of GWAS-QTL Colocalization Events
context('Test locuscompare')
in_fn1 = system.file('extdata','gwas.tsv', package = 'locuscomparer')
in_fn2 = system.file('extdata','eqtl.tsv', package = 'locuscomparer')
marker_col1 = 'rsid'
marker_col2 = 'rsid'
pval_col1 = pval_col2 = 'pval'
snp = NULL
population = 'EUR'
title1 = 'GWAS'; title2 = 'eQTL'
legend = combine = TRUE
lz_ylab_linebreak = FALSE
legend_position = 'bottomright'
p = locuscompare(in_fn1 = in_fn1, in_fn2 = in_fn2)
p
boxiangliu/locuscomparer documentation built on Nov. 27, 2022, 7:26 a.m.
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context('Test locuscompare')
in_fn1 = system.file('extdata','gwas.tsv', package = 'locuscomparer')
in_fn2 = system.file('extdata','eqtl.tsv', package = 'locuscomparer')
marker_col1 = 'rsid'
marker_col2 = 'rsid'
pval_col1 = pval_col2 = 'pval'
snp = NULL
population = 'EUR'
title1 = 'GWAS'; title2 = 'eQTL'
legend = combine = TRUE
lz_ylab_linebreak = FALSE
legend_position = 'bottomright'
p = locuscompare(in_fn1 = in_fn1, in_fn2 = in_fn2)
p
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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