Man pages for briancohn/retina
Tools for plotting and analyzing vertebrate retinas.

add_contoursPrint contour lines onto the retina plot
add_degreesAdd Degrees
add_legendadd a basic legend
assemble_markup_fileAssemble markup file
assemble_point_coordinates_fileAssemble outline P.csv XY coordinates file
assemble_tear_fileAssemble tear file
cartesian_rotationCounterclockwise rotation about the origin
composite_mapMake a Composite Map
compute_longitude_label_locationCompute Longitude Label Location
compute_rotation_matrixCompute rotation matrix
compute_thin_plate_spline_errorCompute fit error at original data points
coordinate_IJImageJ Coordinate Conversion
count_to_rhoConvert count to Density
define_color_breaks_based_on_sourceDefine Zlim by the requested color breaks source
define_contour_breaksSet Contour Breaks Based on Requested Source
degreesConversion from Radians to Degrees
draw_latitude_markingsDraw Latitude Markings
draw_line_segmentsdraw line segments
dss_retistruct_processingRetistruct Wrapper
fit_error_histogramSingle Tps Fit Error Plot
fit_plot_azimuthalPolar Interpolation
fit_plotsRetinal Krig Fit Plots
getDssRemovedConstructor for RecontructedDataset object *EDITED
init_square_mat_plotInitiate the Square Matrix plot to prepare for polar plotting
map_compositesComposite two Retinal Map Matrices
map_vec_sumCompute the matrix sum of multiple retinas
mat_from_ret_objExtract a matrix from a retinal object
Ntae_381-backslash-tNtae_381 Retinal object
nullify_vals_outside_the_circleRemove points that are outside of the plotting circle
optimal_rotationOptimal rotation (for min_err) for rotation error matrix...
plot_circle_radial_linesDraw circle radians about the center
plot_degree_label_for_latitudesInterpolate Input Data with Thin Plate Spline
plot_falciform_processPlot falciform process
plot_from_MATPlot from matrix
plot_longitudinal_labelsPlot longitudinal labels
plot_longitudinal_linesPlot longitudinal spoke lines
plot_original_xy_locationsplot points of XY
plot_radial_spokes_and_labelsPlot radial axes
plot_rotation_optimizePlot rotation optimization scatter plot with minima.
Pmol_752Pseudodax 752 Retinal object
Pmol_753Pseudodax 753 Retinal object
polynomial_vs_lambdaPolynomial vs Lambda Visualization
pretty_list_not_including_maxCreate a pretty number list up to but not including the upper...
range_lenDistance between the range
reef_fishReef Fish
reflect_across_vertical_lineReflect matrix across vertical axis
reorder_columnsReorder columns by function
retinal_arclenRetinal Perimeter Estimation (spherical assumption)
retinal_phi0Rim Latitude Estimation (Ellipsoidal assumption)
retina_objectRetinal Object Construction
retinaplotRetina Plot
RMatInternal equation for axis markup
rotation_optimizeRotation error measurement for two similar retinal maps.
run_all_demosRun all demos
semi_ellipse_perimeterHalf ellipse perimeter approximation (ellipsoid assumption)
sphere_visualizeSpherical Plot visualization Uses retistruct to create...
spherical_coordsImageJ and Retistruction of Input Retinal Data from Flattened...
spline.polyPolygon Spline Fit
ssite_mergeMerge Sampling Site location and Counting Frame counts.
tear_markup_plotTear Markup Plot
vector_retina_compositeGenerate a retinal composite
write_labels_at_endpoint_locationsWrite labels at endpoint locations
briancohn/retina documentation built on Aug. 16, 2017, 8:54 a.m.