NEWS.md

In briandconnelly/softermax: Read Exported Data from 'SoftMax Pro'

softermax 0.3.0

• Added "Exporting SoftMax Pro Data as XML" vignette
• experiment_names, note_names, and plate_names now use vapply instead of sapply

softermax 0.2.4

• read_softmax_xml: Added ... argument, passed to xml2::read_xml
• read_softmax_template now has an encoding argument for specifying the file encoding. If guess is used, encoding is guessed.

softermax 0.2.3

• Added read_softmax5_template
• Added softermax, softermax.experiment, softermax.plate, softermax.note, softermax.wavelength, softermax.well, softermax.template constructors
• Using new constructors in read_softmax5_xml, read_softmax6_xml, read_softmax5_template, and read_softmax6_template
• as.data.frame functions: ReadMode can now be factors (the default behavior) via readModesAsFactors argument
• read_softmax6_template: Sample field now always treated as character
• Removed forcats dependency for package lightness

softermax 0.2.2

• Added apply_template to annotate read data with experiment information stored in plate templates
• Added ReadMode column to as.data.frame to better support multi-mode experiments
• Fixed issue with as.data.frame where row.names were being set
• read_softmax6_template no longer uses subset, which required NSE and produced warnings
• Removed magrittr from Imports. No longer exporting pipe, which hasn't been used for many versions.

softermax 0.2.1

• Specific experiments, plates, etc. can now be accessed by name
• as.data.frame functions: column order change in resulting data frames
• as.data.frame functions: explicit row.names and optional parameters for compatability with generic
• as.data.frame functions: using rbind to combine dfs, removing dplyr dependency.
• Added experiment_names and plate_names functions to extract experiment names and plate names
• read_softmax6_xml now warns if experiment contains multiple plates with the same name
• Added read_softmax_template for importing plate templates
• Added support for experiment Notes in SMP5 files

softermax 0.2.0

• read_softmax_xml now returns a softermax object, which maintains more of the original data and metadata
  • Added as.data.frame methods to coerce these objects to data frames
  • Removed combine_plates which formerly served a similar purpose
• read_softmax_xml automatically detects the version of the file given
• Added support for SoftmaxPro 5.4 XML files. Thanks to Bryon Drown for providing sample files!

softermax 0.1.0

• Added a NEWS.md file to track changes to the package.

briandconnelly/softermax documentation built on May 13, 2019, 7:41 a.m.