API for bstaggmartin/contSimmap
Stochastic Character Maps of Continuous Trait Data on Phylogenies
| Global functions | |
|---|---|
| .anc.edges | Source code |
| .capitalize | Source code |
| .check.matching.tops | Source code |
| .check.seq | Source code |
| .chol | Source code |
| .chol.solve | Source code |
| .cond.traversals | Source code |
| .contsimmap2treeinfo | Source code |
| .des.edges | Source code |
| .edge.ranges | Source code |
| .fix.bds | Source code |
| .fix.cor | Source code |
| .fix.formulae | Source code |
| .fix.make.cor | Source code |
| .fix.mat | Source code |
| .fix.mods.list | Source code |
| .fix.mu | Source code |
| .fix.nobs.X0 | Source code |
| .fix.par.formulae | Source code |
| .fix.param.list | Source code |
| .fix.trait.data | Source code |
| .fix.trait.names | Source code |
| .fix.var.mu | Source code |
| .get.call.envir | Source code |
| .get.edge.info | Source code |
| .get.init.fxn | Source code |
| .get.lookup | Source code |
| .get.maps | Source code |
| .get.nms | Source code |
| .get.ns | Source code |
| .get.states | Source code |
| .get.topo.info | Source code |
| .get.trait.info | Source code |
| .get.tree.info | Source code |
| .get.treeID | Source code |
| .init.arrays | Source code |
| .multAb | Source code |
| .multbA | Source code |
| .nice.array.print | Source code |
| .parse.args | Source code |
| .parse.bys | Source code |
| .phy.method.contsimmap | Source code |
| .prep.contsimmap | Source code |
| .proc.trait.data | Source code |
| .prog | Source code |
| .pseudo.chol | Source code |
| .pseudo.chol.solve | Source code |
| .pseudo.solve | Source code |
| .report.names | Source code |
| .resolve.infs | Source code |
| .resolve.infs.ls | Source code |
| .root.edges | Source code |
| .sis.edges | Source code |
| .solve | Source code |
| .stored.nodes | Source code |
| .sub.anc.edges | Source code |
| .sum3d | Source code |
| .symmetrize.mat | Source code |
| .tip.edges | Source code |
| .uncompress | Source code |
| .uncond.traversals | Source code |
| Nedge.contsimmap | Source code |
| Nnode.contsimmap | Source code |
| Ntip.contsimmap | Source code |
| `[.contsimmap` | Source code |
| `[<-.contsimmap` | Source code |
| `[[.contsimmap` | Source code |
| `[[<-.contsimmap` | Source code |
| accumulate | Source code |
| alter.cols | Man page Source code |
| anc.edges | Source code |
| anc.edges.contsimmap | Source code |
| anc.edges.multiPhylo | Source code |
| anc.edges.phylo | Source code |
| as.contsimmap | Source code |
| as.simmap | Source code |
| contsimmap | Man page |
| des.edges | Source code |
| des.edges.contsimmap | Source code |
| des.edges.multiPhylo | Source code |
| des.edges.phylo | Source code |
| diffusion | Source code |
| edge.inds | Source code |
| edge.ranges | Source code |
| edge.ranges.contsimmap | Source code |
| edge.ranges.multiPhylo | Source code |
| edge.ranges.phylo | Source code |
| find.mle | Source code |
| get.nodes | Source code |
| get.param.info | Source code |
| get.tips | Source code |
| make.contsimmap | Source code |
| make.cor | Source code |
| make.lik.fun | Source code |
| make.traits | Source code |
| nedge | Source code |
| nnode | Source code |
| node.inds | Source code |
| ntip | Source code |
| plot.contsimmap | Man page Source code |
| print.contsimmap | Source code |
| root.edges | Source code |
| root.edges.contsimmap | Source code |
| root.edges.multiPhylo | Source code |
| root.edges.phylo | Source code |
| sim.conthistory | Man page Source code |
| sis.edges | Source code |
| sis.edges.contsimmap | Source code |
| sis.edges.multiPhylo | Source code |
| sis.edges.phylo | Source code |
| summarize.times | Source code |
| summarize.traits | Source code |
| summary.contsimmap | Source code |
| threshold | Source code |
| tip.edges | Source code |
| tip.edges.contsimmap | Source code |
| tip.edges.multiPhylo | Source code |
| tip.edges.phylo | Source code |
| tip.inds | Source code |
