README.md

In byandell/CausalMST: Causal Model Selection Hypothesis Tests

R/CausalMST

Brian Yandell

R/CausalMST is a support library for extending R/qtl2, primarily associated with capabilities.reimplementation of qtl2ggplot (for data visualization). See R/qtl2 (aka qtl2) for the bigger story of the qtl2 suite of routines.

Installation

R/qtl2 is early in development and so is not yet available on CRAN.

You can install R/qtl2 from GitHub.

You will need the following packages for DOread:

install.packages(c("tidyverse", "devtools", "mnormt", "corpcor", "qtl"))

Once you have installed these, install CausalMST using devtools::install_github() as

library(devtools)
install_github("byandell/CausalMST")

Note that the R/qtl package is not required, but is used in the document cmst.Rmd to illustrate how QTL data can be used with these routines. A more modern use of R/qtl2 is presented in mediate1_test.R. For its use, see shinyMediate1.R in package qtl2shiny, where you can also learn about package dependencies. More detail is forthcoming. You will need at the least the following:

install_github("rqtl/qtl2scan")
install.packages("grid")

Vignettes

coming ...

License

Licensed under GPL-3.

byandell/CausalMST documentation built on May 13, 2019, 9:26 a.m.