pheno_region: Create list with phenotypes in region

Description Usage Arguments See Also

Description

Create list with phenotypes in region

Create list with expression phenotypes in region

Usage

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pheno_region(chr_id, start_val, end_val, covar, map, peaks, analyses,
  pheno_data, drivers = 2)

expr_region(chr_id, start_val, end_val, covar, map, project_dir, drivers = 2,
  query_mrna = create_mrna_query_func(project_dir))

Arguments

chr_id, start_val, end_val

chromosome and start and end value

covar

covariate data frame

map

list or vector of map positions

peaks

table of peaks

analyses

table of analyses

pheno_data

matrix of phenotype data

drivers

number of drivers (1 or 2; default is 2)

project_dir

project directory with mRNA data in subdirector RNAseq

query_mrna

query routine for mRNA data (see create_mrna_query_func)

See Also

create_mrna_query_func


byandell/qtl2pattern documentation built on May 13, 2019, 9:51 a.m.